Wall clock time and date at job start Mon Mar 30 2020 07:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 N 1.46301 * 114.00288 * 2 1 4 4 C 1.46902 * 110.99666 * 243.95769 * 3 2 1 5 5 C 1.46889 * 110.99968 * 119.99768 * 3 2 1 6 6 C 1.50702 * 109.46942 * 184.99738 * 5 3 2 7 7 C 1.38116 * 120.02981 * 259.72565 * 6 5 3 8 8 C 1.38389 * 120.05061 * 179.79133 * 7 6 5 9 9 Cl 1.73608 * 119.93967 * 180.23309 * 8 7 6 10 10 C 1.38432 * 120.11780 * 0.46666 * 8 7 6 11 11 C 1.38067 * 120.05217 * 359.78885 * 10 8 7 12 12 C 1.38856 * 120.02713 * 80.00413 * 6 5 3 13 13 O 1.35765 * 120.05567 * 359.97438 * 12 6 5 14 14 C 1.34824 * 117.00159 * 174.37582 * 13 12 6 15 15 H 1.08006 * 120.00133 * 5.06936 * 14 13 12 16 16 C 1.38652 * 120.00297 * 185.06249 * 14 13 12 17 17 N 1.31558 * 119.99510 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00341 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46665 * 59.99869 * 18 16 14 20 20 H 1.48496 * 109.47226 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46747 * 300.00369 * 18 16 14 22 22 H 1.09001 * 109.46752 * 60.00046 * 1 2 3 23 23 H 1.08996 * 109.46962 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46871 * 300.00613 * 1 2 3 25 25 H 1.08990 * 109.47544 * 59.99741 * 4 3 2 26 26 H 1.09001 * 109.46886 * 180.02562 * 4 3 2 27 27 H 1.08999 * 109.46726 * 299.99231 * 4 3 2 28 28 H 1.08997 * 109.47916 * 304.99807 * 5 3 2 29 29 H 1.09006 * 109.47107 * 65.00754 * 5 3 2 30 30 H 1.08000 * 119.97146 * 0.02562 * 7 6 5 31 31 H 1.07996 * 119.97273 * 179.76974 * 10 8 7 32 32 H 1.07996 * 120.02514 * 179.97438 * 11 10 8 33 33 H 0.97003 * 119.99690 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0242 1.3365 0.0000 4 6 2.7884 1.5724 -1.2322 5 6 2.8647 1.5385 1.1876 6 6 3.3600 2.9615 1.2163 7 6 4.6413 3.2560 0.7931 8 6 5.0952 4.5632 0.8153 9 17 6.7042 4.9310 0.2770 10 6 4.2701 5.5773 1.2704 11 6 2.9902 5.2873 1.6994 12 6 2.5306 3.9768 1.6737 13 8 1.2724 3.6892 2.0951 14 6 0.5616 4.6998 2.6347 15 1 0.9661 5.7012 2.6415 16 6 -0.6889 4.4536 3.1808 17 7 -1.1814 3.2337 3.1728 18 14 -1.6741 5.8538 3.9278 19 1 -1.9320 6.8855 2.8913 20 1 -2.9665 5.3317 4.4397 21 1 -0.9064 6.4573 5.0466 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.1257 1.4849 -2.0931 26 1 3.2203 2.5728 -1.2059 27 1 3.5866 0.8344 -1.3116 28 1 2.2793 1.3394 2.0853 29 1 3.7157 0.8583 1.1505 30 1 5.2882 2.4661 0.4411 31 1 4.6280 6.5961 1.2901 32 1 2.3471 6.0788 2.0548 33 1 -2.0561 3.0614 3.5551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768696338.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:35 Heat of formation + Delta-G solvation = -3.482209 kcal Electronic energy + Delta-G solvation = -18829.773057 eV Core-core repulsion = 15691.505302 eV Total energy + Delta-G solvation = -3138.267756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.44499 -37.03403 -36.64569 -35.57221 -33.71000 -32.39585 -30.46400 -28.92559 -26.63670 -25.77955 -25.45952 -22.68355 -21.79798 -20.37501 -18.14301 -17.02710 -16.50034 -15.57535 -15.29064 -14.85916 -14.60519 -14.49680 -13.88083 -13.68694 -13.17914 -13.04009 -12.83155 -12.56272 -12.38608 -12.11261 -11.87084 -11.59483 -11.25962 -11.13759 -10.97420 -10.82432 -10.55535 -10.45444 -10.35869 -9.55293 -9.43647 -8.90755 -8.42711 -8.10172 -7.29718 -6.56632 -4.14008 1.82601 2.03836 2.76541 3.07427 3.07897 3.10939 3.16999 3.87070 4.32062 4.96979 5.06779 5.21678 5.42909 5.47925 5.60196 5.75546 5.88155 5.91827 6.02338 6.08236 6.10225 6.19670 6.32749 6.36595 6.43034 6.59144 6.80118 6.82248 7.06493 7.17103 7.29265 7.49708 7.52334 7.85883 8.87638 9.54374 10.59328 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.007570 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.217088 B = 3698.090204 C = 5589.754956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.275 6.275 3 N -0.348 5.348 4 C 0.011 3.989 5 C 0.107 3.893 6 C -0.155 4.155 7 C -0.053 4.053 8 C -0.130 4.130 9 Cl -0.107 7.107 10 C -0.054 4.054 11 C -0.227 4.227 12 C 0.175 3.825 13 O -0.148 6.148 14 C -0.396 4.396 15 H 0.093 0.907 16 C 0.046 3.954 17 N -0.849 5.849 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 H 0.037 0.963 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.030 0.970 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -0.227 -4.434 7.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.279 6.279 3 N -0.117 5.117 4 C -0.138 4.138 5 C -0.020 4.020 6 C -0.158 4.158 7 C -0.073 4.073 8 C -0.157 4.157 9 Cl -0.078 7.078 10 C -0.073 4.073 11 C -0.246 4.246 12 C 0.118 3.882 13 O -0.049 6.049 14 C -0.472 4.472 15 H 0.110 0.890 16 C -0.161 4.161 17 N -0.482 5.482 18 Si 0.764 3.236 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.154 0.846 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.654 -0.433 -4.372 7.160 hybrid contribution 0.205 0.448 0.242 0.549 sum 5.859 0.015 -4.129 7.168 Atomic orbital electron populations 1.22560 0.80568 1.00582 1.01576 1.90544 1.21072 1.19306 1.96994 1.67749 1.34007 1.07413 1.02569 1.22692 0.96949 1.01548 0.92595 1.20871 0.95021 0.92033 0.94027 1.18468 0.93358 0.93457 1.10494 1.20410 0.94475 0.94409 0.97958 1.20206 0.86804 0.94727 1.13967 1.98280 1.24776 1.95094 1.89689 1.20649 0.92889 0.97646 0.96153 1.21111 0.96725 0.97151 1.09627 1.19113 0.85708 0.91789 0.91583 1.84035 1.18625 1.37241 1.64958 1.21345 0.99378 0.88590 1.37907 0.88992 1.25284 0.96314 0.97920 0.96562 1.70032 1.17858 1.19417 1.40851 0.85797 0.78772 0.79631 0.79385 1.19400 1.20185 1.19419 0.94414 0.90392 0.92173 0.91394 0.89324 0.95100 0.88723 0.94254 0.86194 0.86381 0.84562 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 11.51 101.05 1.16 1.93 16 2 O -0.28 -5.31 10.96 -13.92 -0.15 -5.46 16 3 N -0.35 -6.84 5.13 -122.43 -0.63 -7.47 16 4 C 0.01 0.18 9.82 60.07 0.59 0.77 16 5 C 0.11 2.10 5.32 -4.98 -0.03 2.07 16 6 C -0.16 -3.07 4.39 -104.44 -0.46 -3.53 16 7 C -0.05 -0.92 8.38 -39.57 -0.33 -1.25 16 8 C -0.13 -2.23 6.32 -39.45 -0.25 -2.48 16 9 Cl -0.11 -1.59 28.95 -51.86 -1.50 -3.10 16 10 C -0.05 -0.96 9.82 -39.57 -0.39 -1.35 16 11 C -0.23 -4.58 9.17 -39.40 -0.36 -4.95 16 12 C 0.18 3.92 6.62 -39.11 -0.26 3.67 16 13 O -0.15 -3.89 8.99 0.02 0.00 -3.89 16 14 C -0.40 -10.33 9.49 30.89 0.29 -10.04 16 15 H 0.09 2.21 5.20 -52.48 -0.27 1.93 16 16 C 0.05 1.17 5.49 -17.52 -0.10 1.08 16 17 N -0.85 -23.29 13.67 55.48 0.76 -22.53 16 18 Si 0.94 19.45 29.55 -169.99 -5.02 14.42 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.46 6.29 -51.93 -0.33 1.13 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 2.07 7.86 -51.93 -0.41 1.66 16 29 H 0.04 0.69 8.00 -51.93 -0.42 0.27 16 30 H 0.12 1.83 8.03 -52.49 -0.42 1.41 16 31 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.14 2.72 5.64 -52.49 -0.30 2.42 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -27.82 303.02 -5.92 -33.74 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.81 Total: 3.79 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -0.12 Total: -14.07 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.13 Total: -30.01 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.15 Total: -9.35 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -1.50 Total: -3.10 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.82 -5.92 -33.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768696338.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.254 kcal (2) G-P(sol) polarization free energy of solvation -27.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds