Wall clock time and date at job start Mon Mar 30 2020 07:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 N 1.46301 * 114.00288 * 2 1 4 4 C 1.46902 * 110.99666 * 243.95769 * 3 2 1 5 5 C 1.46889 * 110.99968 * 119.99768 * 3 2 1 6 6 C 1.50702 * 109.46942 * 184.99738 * 5 3 2 7 7 C 1.38116 * 120.02981 * 259.72565 * 6 5 3 8 8 C 1.38389 * 120.05061 * 179.79133 * 7 6 5 9 9 Cl 1.73608 * 119.93967 * 180.23309 * 8 7 6 10 10 C 1.38432 * 120.11780 * 0.46666 * 8 7 6 11 11 C 1.38067 * 120.05217 * 359.78885 * 10 8 7 12 12 C 1.38856 * 120.02713 * 80.00413 * 6 5 3 13 13 O 1.35765 * 120.05567 * 359.97438 * 12 6 5 14 14 C 1.34824 * 117.00159 * 174.37582 * 13 12 6 15 15 H 1.08006 * 120.00133 * 5.06936 * 14 13 12 16 16 C 1.38652 * 120.00297 * 185.06249 * 14 13 12 17 17 N 1.31558 * 119.99510 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00341 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46665 * 59.99869 * 18 16 14 20 20 H 1.48496 * 109.47226 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46747 * 300.00369 * 18 16 14 22 22 H 1.09001 * 109.46752 * 60.00046 * 1 2 3 23 23 H 1.08996 * 109.46962 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46871 * 300.00613 * 1 2 3 25 25 H 1.08990 * 109.47544 * 59.99741 * 4 3 2 26 26 H 1.09001 * 109.46886 * 180.02562 * 4 3 2 27 27 H 1.08999 * 109.46726 * 299.99231 * 4 3 2 28 28 H 1.08997 * 109.47916 * 304.99807 * 5 3 2 29 29 H 1.09006 * 109.47107 * 65.00754 * 5 3 2 30 30 H 1.08000 * 119.97146 * 0.02562 * 7 6 5 31 31 H 1.07996 * 119.97273 * 179.76974 * 10 8 7 32 32 H 1.07996 * 120.02514 * 179.97438 * 11 10 8 33 33 H 0.97003 * 119.99690 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0242 1.3365 0.0000 4 6 2.7884 1.5724 -1.2322 5 6 2.8647 1.5385 1.1876 6 6 3.3600 2.9615 1.2163 7 6 4.6413 3.2560 0.7931 8 6 5.0952 4.5632 0.8153 9 17 6.7042 4.9310 0.2770 10 6 4.2701 5.5773 1.2704 11 6 2.9902 5.2873 1.6994 12 6 2.5306 3.9768 1.6737 13 8 1.2724 3.6892 2.0951 14 6 0.5616 4.6998 2.6347 15 1 0.9661 5.7012 2.6415 16 6 -0.6889 4.4536 3.1808 17 7 -1.1814 3.2337 3.1728 18 14 -1.6741 5.8538 3.9278 19 1 -1.9320 6.8855 2.8913 20 1 -2.9665 5.3317 4.4397 21 1 -0.9064 6.4573 5.0466 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.1257 1.4849 -2.0931 26 1 3.2203 2.5728 -1.2059 27 1 3.5866 0.8344 -1.3116 28 1 2.2793 1.3394 2.0853 29 1 3.7157 0.8583 1.1505 30 1 5.2882 2.4661 0.4411 31 1 4.6280 6.5961 1.2901 32 1 2.3471 6.0788 2.0548 33 1 -2.0561 3.0614 3.5551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768696338.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:35 Heat of formation + Delta-G solvation = -20.385906 kcal Electronic energy + Delta-G solvation = -18830.506057 eV Core-core repulsion = 15691.505302 eV Total energy + Delta-G solvation = -3139.000755 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06589 -38.64873 -38.11950 -36.99743 -35.20013 -34.25074 -31.96121 -30.49949 -28.09318 -27.39846 -27.14313 -24.16261 -23.42275 -21.91134 -19.89099 -18.71626 -18.00152 -17.09139 -16.89648 -16.39995 -16.10801 -16.08614 -15.54026 -15.26208 -14.79377 -14.50450 -14.32104 -14.07491 -13.82492 -13.59427 -13.44972 -13.08470 -12.78166 -12.69810 -12.50107 -12.26625 -12.15172 -11.86904 -11.81113 -11.20655 -10.98595 -10.72388 -9.92169 -9.55738 -8.92228 -8.43558 -6.09961 0.30638 0.49319 1.34261 1.38562 1.47256 1.52728 1.72203 2.18736 2.72655 3.13754 3.43610 3.72437 3.95089 4.01434 4.17843 4.39162 4.47376 4.51272 4.59206 4.61815 4.68117 4.80289 4.83214 4.89220 4.93788 5.05422 5.11129 5.30589 5.42968 5.56250 5.82774 5.91819 6.01016 6.06742 6.99981 7.77368 8.76797 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.007570 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.217088 B = 3698.090204 C = 5589.754956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.283 6.283 3 N -0.374 5.374 4 C 0.013 3.987 5 C 0.114 3.886 6 C -0.155 4.155 7 C -0.046 4.046 8 C -0.115 4.115 9 Cl -0.075 7.075 10 C -0.050 4.050 11 C -0.234 4.234 12 C 0.146 3.854 13 O -0.195 6.195 14 C -0.418 4.418 15 H 0.103 0.897 16 C -0.012 4.012 17 N -0.904 5.904 18 Si 1.010 2.990 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.259 1.259 22 H 0.042 0.958 23 H 0.115 0.885 24 H 0.021 0.979 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.133 0.867 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 0.763 -5.543 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.287 6.287 3 N -0.144 5.144 4 C -0.135 4.135 5 C -0.013 4.013 6 C -0.157 4.157 7 C -0.065 4.065 8 C -0.142 4.142 9 Cl -0.046 7.046 10 C -0.069 4.069 11 C -0.253 4.253 12 C 0.092 3.908 13 O -0.099 6.099 14 C -0.494 4.494 15 H 0.120 0.880 16 C -0.212 4.212 17 N -0.540 5.540 18 Si 0.830 3.170 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.183 1.183 22 H 0.061 0.939 23 H 0.133 0.867 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.151 0.849 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.009 0.575 -5.508 9.737 hybrid contribution -0.132 0.134 0.423 0.463 sum 7.878 0.708 -5.085 9.403 Atomic orbital electron populations 1.22613 0.79782 1.02452 0.99884 1.90504 1.21856 1.19337 1.96966 1.67716 1.35175 1.07802 1.03675 1.22721 0.97435 1.01946 0.91368 1.20717 0.95135 0.92574 0.92922 1.18647 0.94010 0.93034 1.10053 1.20664 0.93511 0.95500 0.96803 1.20422 0.87996 0.94460 1.11349 1.98305 1.22203 1.94911 1.89179 1.20926 0.91674 0.99372 0.94881 1.21215 0.97952 0.96248 1.09901 1.19659 0.85434 0.93522 0.92181 1.84032 1.20503 1.37819 1.67555 1.21805 1.00004 0.89254 1.38294 0.87950 1.26426 0.97250 1.00535 0.96940 1.70183 1.18516 1.21838 1.43501 0.84757 0.77052 0.76378 0.78776 1.18322 1.19929 1.18325 0.93904 0.86707 0.95988 0.90464 0.89376 0.93177 0.92426 0.91911 0.83277 0.83392 0.84905 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.76 11.51 113.37 1.30 3.07 16 2 O -0.28 -10.94 10.96 -50.16 -0.55 -11.49 16 3 N -0.37 -14.77 5.13 -541.26 -2.78 -17.54 16 4 C 0.01 0.41 9.82 127.69 1.25 1.66 16 5 C 0.11 4.49 5.32 85.56 0.46 4.95 16 6 C -0.16 -6.06 4.39 -19.74 -0.09 -6.15 16 7 C -0.05 -1.45 8.38 22.28 0.19 -1.26 16 8 C -0.12 -3.54 6.32 22.35 0.14 -3.40 16 9 Cl -0.07 -1.90 28.95 -2.72 -0.08 -1.98 16 10 C -0.05 -1.62 9.82 22.28 0.22 -1.40 16 11 C -0.23 -9.35 9.17 22.39 0.21 -9.14 16 12 C 0.15 6.66 6.62 22.58 0.15 6.81 16 13 O -0.20 -10.83 8.99 -22.84 -0.21 -11.04 16 14 C -0.42 -22.78 9.49 67.92 0.64 -22.14 16 15 H 0.10 5.08 5.20 -2.91 -0.02 5.06 16 16 C -0.01 -0.64 5.49 84.83 0.47 -0.17 16 17 N -0.90 -52.70 13.67 21.61 0.30 -52.41 16 18 Si 1.01 40.96 29.55 68.60 2.03 42.99 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.09 2.72 6.29 -2.39 -0.02 2.71 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 2.68 7.86 -2.39 -0.02 2.66 16 29 H 0.06 2.12 8.00 -2.38 -0.02 2.10 16 30 H 0.15 3.90 8.03 -2.91 -0.02 3.88 16 31 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 32 H 0.13 5.33 5.64 -2.91 -0.02 5.31 16 33 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -63.43 303.02 4.77 -58.66 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.12 Total: 19.98 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 4.94 Total: -27.17 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -2.48 Total: -69.95 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.76 Total: -22.53 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -63.43 4.77 -58.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768696338.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.275 kcal (2) G-P(sol) polarization free energy of solvation -63.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds