Wall clock time and date at job start Mon Mar 30 2020 07:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46896 * 109.47603 * 2 1 4 4 C 1.46893 * 111.00644 * 190.00118 * 3 2 1 5 5 C 1.50706 * 109.47176 * 66.04281 * 4 3 2 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 C 1.39821 * 110.99755 * 66.04279 * 3 2 1 14 14 C 1.38895 * 120.04727 * 63.68440 * 13 3 2 15 15 C 1.38105 * 119.94979 * 179.74699 * 14 13 3 16 16 C 1.38479 * 120.04987 * 0.52359 * 15 14 13 17 17 F 1.35100 * 119.95391 * 179.76661 * 16 15 14 18 18 C 1.38445 * 120.09586 * 359.74863 * 16 15 14 19 19 C 1.38142 * 120.05228 * 359.97438 * 18 16 15 20 20 C 1.50700 * 120.02334 * 179.97438 * 19 18 16 21 21 Cl 1.80300 * 109.47328 * 270.01941 * 20 19 18 22 22 H 1.09000 * 109.46985 * 299.99692 * 1 2 3 23 23 H 1.09005 * 109.47527 * 60.00080 * 1 2 3 24 24 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47251 * 239.99846 * 2 1 3 26 26 H 1.09000 * 109.47274 * 120.00604 * 2 1 3 27 27 H 1.09001 * 109.46739 * 306.04690 * 4 3 2 28 28 H 1.09000 * 109.47767 * 186.04949 * 4 3 2 29 29 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.02717 * 0.02562 * 14 13 3 31 31 H 1.07999 * 119.97177 * 180.27855 * 15 14 13 32 32 H 1.08006 * 119.97447 * 179.97438 * 18 16 15 33 33 H 1.09003 * 109.47135 * 30.02625 * 20 19 18 34 34 H 1.09005 * 109.46757 * 150.01699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4685 1.4311 -0.2382 5 6 3.7638 0.9464 -1.6342 6 1 2.9559 0.6356 -2.2801 7 6 5.0652 0.8997 -2.0869 8 7 6.0490 1.2778 -1.3002 9 14 5.4311 0.2996 -3.8177 10 1 4.7405 1.1724 -4.8006 11 1 6.8958 0.3462 -4.0584 12 1 4.9481 -1.0964 -3.9699 13 6 1.6870 2.0340 1.1929 14 6 2.2110 1.5852 2.3984 15 6 1.8852 2.2310 3.5749 16 6 1.0282 3.3186 3.5545 17 9 0.7071 3.9460 4.7071 18 6 0.5003 3.7641 2.3547 19 6 0.8280 3.1247 1.1749 20 6 0.2525 3.6099 -0.1307 21 17 -1.3045 2.7600 -0.4540 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.9758 0.7910 0.4836 28 1 3.8226 2.4559 -0.1268 29 1 6.9647 1.2453 -1.6189 30 1 2.8763 0.7346 2.4152 31 1 2.2961 1.8851 4.5119 32 1 -0.1682 4.6123 2.3412 33 1 0.0751 4.6838 -0.0728 34 1 0.9550 3.4007 -0.9375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:41 Heat of formation + Delta-G solvation = -30.512377 kcal Electronic energy + Delta-G solvation = -18871.781957 eV Core-core repulsion = 15744.714875 eV Total energy + Delta-G solvation = -3127.067082 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.72353 -39.70486 -36.21279 -35.63766 -32.74477 -32.22275 -30.48022 -29.09528 -26.88532 -25.66389 -23.05525 -22.49030 -21.38844 -20.00875 -17.21359 -16.71227 -16.20073 -15.67641 -15.50008 -15.00917 -14.36353 -14.13475 -13.90410 -13.70238 -13.43756 -13.22805 -13.08514 -12.45040 -12.23145 -12.00525 -11.67925 -11.38127 -11.15683 -11.02639 -10.82322 -10.58453 -10.39842 -10.12488 -10.03430 -9.82131 -9.36976 -8.83360 -8.53691 -8.15520 -7.58278 -6.12121 -4.14619 1.17841 1.36350 2.72578 3.28585 3.33292 3.35807 3.83246 4.32729 4.35997 4.60686 4.81777 4.92181 5.16719 5.23817 5.38812 5.53396 5.62633 5.81525 5.86752 5.95363 6.05478 6.15262 6.27709 6.35193 6.40356 6.60268 6.75947 6.81170 6.94087 7.19015 7.21447 7.72294 7.91622 8.03580 8.44660 8.92228 9.50224 10.98393 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019091 B = 0.006237 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.305217 B = 4488.191972 C = 5259.323486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 N -0.507 5.507 4 C 0.199 3.801 5 C -0.512 4.512 6 H 0.066 0.934 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.134 3.866 14 C -0.125 4.125 15 C -0.135 4.135 16 C 0.075 3.925 17 F -0.146 7.146 18 C -0.132 4.132 19 C -0.070 4.070 20 C 0.025 3.975 21 Cl -0.183 7.183 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.023 0.977 27 H -0.003 1.003 28 H 0.032 0.968 29 H 0.263 0.737 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 2.713 6.237 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 N -0.229 5.229 4 C 0.076 3.924 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.038 3.962 14 C -0.145 4.145 15 C -0.155 4.155 16 C 0.055 3.945 17 F -0.125 7.125 18 C -0.151 4.151 19 C -0.071 4.071 20 C -0.037 4.037 21 Cl -0.156 7.156 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.041 0.959 27 H 0.015 0.985 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.110 0.890 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.712 2.924 5.832 12.542 hybrid contribution 0.762 -0.631 0.082 0.993 sum -9.950 2.293 5.913 11.799 Atomic orbital electron populations 1.21998 0.95871 1.00330 1.02627 1.22022 0.94516 0.88230 1.01382 1.59992 1.19559 1.15716 1.27678 1.19813 0.78388 0.97342 0.96900 1.21071 0.92304 1.43451 0.98219 0.91586 1.24973 0.96159 0.95455 0.97799 1.69949 0.99664 1.47671 1.36255 0.86541 0.77042 0.79352 0.84382 1.20087 1.21365 1.20205 1.19039 0.93450 0.93594 0.90086 1.21702 1.00021 1.00593 0.92207 1.21027 0.99003 0.95832 0.99634 1.17509 1.00459 0.94934 0.81549 1.91461 1.91712 1.81596 1.47734 1.20860 1.01817 1.01712 0.90720 1.19457 0.97835 0.96139 0.93719 1.23003 0.86646 0.96604 0.97487 1.98694 1.38635 1.81940 1.96352 0.93393 0.91212 0.93600 0.89141 0.95909 0.98485 0.95037 0.92739 0.84934 0.85159 0.84846 0.89049 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.85 37.15 0.33 -2.05 16 2 C 0.06 1.18 5.41 -3.83 -0.02 1.16 16 3 N -0.51 -9.98 3.43 -172.46 -0.59 -10.57 16 4 C 0.20 4.79 4.31 -4.98 -0.02 4.77 16 5 C -0.51 -13.44 8.37 -34.44 -0.29 -13.73 16 6 H 0.07 1.71 7.18 -52.49 -0.38 1.33 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 9 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.13 2.34 3.53 -83.74 -0.30 2.05 16 14 C -0.12 -2.06 8.58 -39.39 -0.34 -2.40 16 15 C -0.14 -1.98 10.02 -39.54 -0.40 -2.37 16 16 C 0.07 1.09 7.30 -39.42 -0.29 0.80 16 17 F -0.15 -2.10 17.26 2.25 0.04 -2.06 16 18 C -0.13 -1.85 9.67 -39.54 -0.38 -2.23 16 19 C -0.07 -1.08 5.26 -104.43 -0.55 -1.63 16 20 C 0.02 0.35 6.54 36.01 0.24 0.59 16 21 Cl -0.18 -2.60 26.00 -51.86 -1.35 -3.95 16 22 H 0.05 0.76 7.01 -51.93 -0.36 0.39 16 23 H 0.07 1.13 6.47 -51.93 -0.34 0.80 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.80 6.65 -51.93 -0.35 1.45 16 26 H 0.02 0.41 7.15 -51.93 -0.37 0.04 16 27 H 0.00 -0.07 7.49 -51.93 -0.39 -0.46 16 28 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.13 2.20 7.13 -52.49 -0.37 1.83 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.09 1.04 8.09 -51.93 -0.42 0.63 16 34 H 0.12 1.99 7.46 -51.93 -0.39 1.60 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -27.36 299.38 -7.97 -35.33 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.18 Total: -0.69 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.11 Total: -13.57 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.14 Total: -35.37 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -1.35 Total: -3.95 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.36 -7.97 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.815 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds