Wall clock time and date at job start Mon Mar 30 2020 07:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46896 * 109.47603 * 2 1 4 4 C 1.46893 * 111.00644 * 190.00118 * 3 2 1 5 5 C 1.50706 * 109.47176 * 66.04281 * 4 3 2 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 C 1.39821 * 110.99755 * 66.04279 * 3 2 1 14 14 C 1.38895 * 120.04727 * 63.68440 * 13 3 2 15 15 C 1.38105 * 119.94979 * 179.74699 * 14 13 3 16 16 C 1.38479 * 120.04987 * 0.52359 * 15 14 13 17 17 F 1.35100 * 119.95391 * 179.76661 * 16 15 14 18 18 C 1.38445 * 120.09586 * 359.74863 * 16 15 14 19 19 C 1.38142 * 120.05228 * 359.97438 * 18 16 15 20 20 C 1.50700 * 120.02334 * 179.97438 * 19 18 16 21 21 Cl 1.80300 * 109.47328 * 270.01941 * 20 19 18 22 22 H 1.09000 * 109.46985 * 299.99692 * 1 2 3 23 23 H 1.09005 * 109.47527 * 60.00080 * 1 2 3 24 24 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47251 * 239.99846 * 2 1 3 26 26 H 1.09000 * 109.47274 * 120.00604 * 2 1 3 27 27 H 1.09001 * 109.46739 * 306.04690 * 4 3 2 28 28 H 1.09000 * 109.47767 * 186.04949 * 4 3 2 29 29 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.02717 * 0.02562 * 14 13 3 31 31 H 1.07999 * 119.97177 * 180.27855 * 15 14 13 32 32 H 1.08006 * 119.97447 * 179.97438 * 18 16 15 33 33 H 1.09003 * 109.47135 * 30.02625 * 20 19 18 34 34 H 1.09005 * 109.46757 * 150.01699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4685 1.4311 -0.2382 5 6 3.7638 0.9464 -1.6342 6 1 2.9559 0.6356 -2.2801 7 6 5.0652 0.8997 -2.0869 8 7 6.0490 1.2778 -1.3002 9 14 5.4311 0.2996 -3.8177 10 1 4.7405 1.1724 -4.8006 11 1 6.8958 0.3462 -4.0584 12 1 4.9481 -1.0964 -3.9699 13 6 1.6870 2.0340 1.1929 14 6 2.2110 1.5852 2.3984 15 6 1.8852 2.2310 3.5749 16 6 1.0282 3.3186 3.5545 17 9 0.7071 3.9460 4.7071 18 6 0.5003 3.7641 2.3547 19 6 0.8280 3.1247 1.1749 20 6 0.2525 3.6099 -0.1307 21 17 -1.3045 2.7600 -0.4540 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.9758 0.7910 0.4836 28 1 3.8226 2.4559 -0.1268 29 1 6.9647 1.2453 -1.6189 30 1 2.8763 0.7346 2.4152 31 1 2.2961 1.8851 4.5119 32 1 -0.1682 4.6123 2.3412 33 1 0.0751 4.6838 -0.0728 34 1 0.9550 3.4007 -0.9375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:41 Heat of formation + Delta-G solvation = -43.863493 kcal Electronic energy + Delta-G solvation = -18872.360905 eV Core-core repulsion = 15744.714875 eV Total energy + Delta-G solvation = -3127.646030 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.88090 -41.03479 -37.67354 -36.77252 -34.75196 -33.41716 -31.87838 -30.65099 -28.36288 -27.14589 -24.48511 -24.20812 -22.65725 -21.41935 -18.68637 -18.24498 -17.55225 -17.21908 -16.84529 -16.55177 -15.92518 -15.46465 -15.14085 -14.95498 -14.75505 -14.54011 -14.39728 -14.19275 -13.79019 -13.48398 -12.96502 -12.85726 -12.69247 -12.60487 -12.37559 -12.27498 -11.90995 -11.83822 -11.39663 -11.26198 -10.93904 -10.60347 -10.02362 -9.43550 -9.20766 -8.19724 -6.29292 -0.02560 0.12723 1.43934 1.45761 1.53553 1.58174 2.40871 2.60872 3.09688 3.15602 3.17846 3.62300 3.75806 4.05263 4.18721 4.30448 4.37682 4.44544 4.58017 4.68249 4.80779 4.88798 5.00236 5.05578 5.10573 5.15299 5.16878 5.30959 5.46665 5.52790 5.68455 5.80367 6.07861 6.20287 6.75442 6.85512 7.40311 8.90828 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019091 B = 0.006237 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.305217 B = 4488.191972 C = 5259.323486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 N -0.502 5.502 4 C 0.218 3.782 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.104 3.896 14 C -0.137 4.137 15 C -0.131 4.131 16 C 0.077 3.923 17 F -0.141 7.141 18 C -0.122 4.122 19 C -0.071 4.071 20 C 0.027 3.973 21 Cl -0.181 7.181 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.022 0.978 27 H -0.029 1.029 28 H 0.002 0.998 29 H 0.264 0.736 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.124 0.876 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.106 3.190 6.303 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 N -0.224 5.224 4 C 0.094 3.906 5 C -0.559 4.559 6 H 0.085 0.915 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.009 3.991 14 C -0.157 4.157 15 C -0.151 4.151 16 C 0.058 3.942 17 F -0.120 7.120 18 C -0.141 4.141 19 C -0.072 4.072 20 C -0.035 4.035 21 Cl -0.155 7.155 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.040 0.960 27 H -0.011 1.011 28 H 0.020 0.980 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.142 0.858 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.275 3.398 5.905 14.039 hybrid contribution 1.192 -0.748 0.165 1.416 sum -11.084 2.651 6.070 12.912 Atomic orbital electron populations 1.21859 0.93426 1.01606 1.02399 1.22027 0.96379 0.87451 1.00311 1.59849 1.16392 1.16591 1.29565 1.19368 0.81173 0.94642 0.95429 1.21390 0.92474 1.42961 0.99111 0.91509 1.25827 0.96039 0.95591 1.01760 1.70077 0.99999 1.49018 1.38202 0.85499 0.76785 0.79152 0.79580 1.19332 1.21204 1.19305 1.19164 0.95495 0.94949 0.89461 1.21636 1.00439 1.00873 0.92785 1.21189 0.98616 0.95536 0.99746 1.17588 1.00050 0.94665 0.81908 1.91480 1.91593 1.81421 1.47506 1.21116 1.01380 1.01911 0.89723 1.19566 0.97403 0.95316 0.94933 1.22999 0.86204 0.98345 0.95948 1.98694 1.38280 1.82155 1.96331 0.93268 0.91590 0.91581 0.91133 0.96017 1.01124 0.97962 0.92746 0.86078 0.82992 0.81851 0.85820 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.85 71.98 0.64 -3.49 16 2 C 0.06 2.39 5.41 86.30 0.47 2.86 16 3 N -0.50 -20.20 3.43 -699.53 -2.40 -22.60 16 4 C 0.22 10.98 4.31 85.56 0.37 11.35 16 5 C -0.52 -28.01 8.37 25.60 0.21 -27.80 16 6 H 0.07 3.51 7.18 -2.91 -0.02 3.49 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 9 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.10 3.66 3.53 38.17 0.13 3.79 16 14 C -0.14 -4.54 8.58 22.40 0.19 -4.35 16 15 C -0.13 -3.66 10.02 22.30 0.22 -3.43 16 16 C 0.08 2.06 7.30 22.38 0.16 2.22 16 17 F -0.14 -3.64 17.26 44.97 0.78 -2.87 16 18 C -0.12 -3.09 9.67 22.30 0.22 -2.88 16 19 C -0.07 -2.09 5.26 -19.74 -0.10 -2.19 16 20 C 0.03 0.73 6.54 71.24 0.47 1.20 16 21 Cl -0.18 -4.82 26.00 -2.72 -0.07 -4.89 16 22 H 0.05 1.49 7.01 -2.39 -0.02 1.47 16 23 H 0.07 2.06 6.47 -2.38 -0.02 2.05 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 2.86 6.65 -2.39 -0.02 2.85 16 26 H 0.02 0.80 7.15 -2.39 -0.02 0.78 16 27 H -0.03 -1.58 7.49 -2.39 -0.02 -1.60 16 28 H 0.00 0.13 8.06 -2.39 -0.02 0.11 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.12 4.21 7.13 -2.91 -0.02 4.19 16 31 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.12 2.48 8.09 -2.39 -0.02 2.46 16 34 H 0.10 3.20 7.46 -2.38 -0.02 3.18 16 Total: -1.00 -59.05 299.38 5.16 -53.89 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.10 Total: 7.60 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 3.44 Total: -21.92 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -2.11 Total: -76.77 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -4.82 SS G_CDS: -0.07 Total: -4.89 kcal Total: -59.05 5.16 -53.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.027 kcal (2) G-P(sol) polarization free energy of solvation -59.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds