Wall clock time and date at job start Mon Mar 30 2020 07:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46775 * 2 1 4 4 C 1.50704 * 109.46709 * 240.00731 * 2 1 3 5 5 H 1.07995 * 120.00027 * 239.99188 * 4 2 1 6 6 C 1.37875 * 119.99901 * 60.00371 * 4 2 1 7 7 N 1.31509 * 120.00398 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99919 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47034 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47498 * 119.99166 * 8 6 4 11 11 H 1.48507 * 109.46855 * 239.99573 * 8 6 4 12 12 N 1.46898 * 109.47524 * 120.00562 * 2 1 3 13 13 C 1.46896 * 111.00077 * 205.40955 * 12 2 1 14 14 H 1.08997 * 109.47293 * 326.82992 * 13 12 2 15 15 C 1.52998 * 109.47191 * 86.83140 * 13 12 2 16 16 C 1.50698 * 109.47195 * 206.82923 * 13 12 2 17 17 C 1.38245 * 119.98089 * 340.02388 * 16 13 12 18 18 C 1.38188 * 120.03944 * 179.97438 * 17 16 13 19 19 C 1.38491 * 119.99840 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.01716 * 180.02562 * 19 18 17 21 21 C 1.38410 * 119.96248 * 359.97438 * 19 18 17 22 22 C 1.38335 * 119.96196 * 0.02562 * 21 19 18 23 23 Cl 1.73608 * 120.00003 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.46724 * 174.09233 * 1 2 3 25 25 H 1.09001 * 109.46304 * 294.08854 * 1 2 3 26 26 H 1.09002 * 109.47322 * 54.08945 * 1 2 3 27 27 H 0.97002 * 120.00391 * 180.02562 * 7 6 4 28 28 H 1.00896 * 110.99587 * 329.36555 * 12 2 1 29 29 H 1.08999 * 109.47167 * 64.75353 * 15 13 12 30 30 H 1.08993 * 109.47448 * 184.75352 * 15 13 12 31 31 H 1.09004 * 109.46965 * 304.75674 * 15 13 12 32 32 H 1.08004 * 119.98454 * 359.97438 * 17 16 13 33 33 H 1.08000 * 119.99632 * 180.02562 * 18 17 16 34 34 H 1.07998 * 120.01858 * 180.29469 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1317 6 6 1.6992 -0.2390 -2.4828 7 7 0.9428 0.8300 -2.6033 8 14 2.3212 -1.1198 -4.0082 9 1 3.1462 -2.2866 -3.6042 10 1 1.1659 -1.5861 -4.8162 11 1 3.1464 -0.1867 -4.8166 12 7 2.0198 -0.6926 1.1993 13 6 3.3632 -0.2247 1.5658 14 1 3.9177 0.0311 0.6629 15 6 3.2465 1.0113 2.4599 16 6 4.0897 -1.3157 2.3093 17 6 3.3763 -2.3405 2.9027 18 6 4.0413 -3.3419 3.5843 19 6 5.4231 -3.3188 3.6739 20 9 6.0737 -4.2979 4.3398 21 6 6.1373 -2.2928 3.0798 22 6 5.4700 -1.2912 2.3978 23 17 6.3648 -0.0034 1.6529 24 1 -0.3633 -1.0222 -0.1058 25 1 -0.3632 0.4195 0.9382 26 1 -0.3634 0.6028 -0.8323 27 1 0.7082 1.1614 -3.4843 28 1 1.3762 -0.5825 1.9685 29 1 2.7666 0.7363 3.3992 30 1 4.2410 1.4083 2.6627 31 1 2.6484 1.7699 1.9549 32 1 2.2987 -2.3586 2.8334 33 1 3.4834 -4.1424 4.0472 34 1 7.2152 -2.2765 3.1450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129605296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:24 Heat of formation + Delta-G solvation = -32.541683 kcal Electronic energy + Delta-G solvation = -18545.937724 eV Core-core repulsion = 15418.782645 eV Total energy + Delta-G solvation = -3127.155079 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.89298 -39.39023 -36.47499 -36.25622 -33.32442 -31.08669 -30.85951 -28.83508 -26.97825 -25.16196 -23.37813 -22.90229 -20.50619 -20.12579 -17.76006 -16.55888 -16.11189 -15.72572 -15.58377 -14.88463 -14.59353 -14.04333 -13.99758 -13.62126 -13.37484 -13.02649 -12.85360 -12.55581 -12.24868 -11.51937 -11.37996 -11.26321 -11.14123 -10.94515 -10.88113 -10.66373 -10.49275 -10.28945 -10.05285 -9.86506 -9.16105 -8.87732 -8.41810 -8.37782 -7.35500 -5.99119 -4.01811 1.10429 1.21889 2.18023 3.31179 3.39358 3.45072 3.56711 4.30200 4.43968 4.75660 4.83707 4.96538 5.21097 5.32312 5.45979 5.59919 5.65490 5.77966 5.90137 5.96447 6.17547 6.29828 6.36111 6.45331 6.64030 6.73763 6.85129 6.94340 7.00070 7.41658 7.70133 7.90544 8.19763 8.31634 8.67745 9.06001 9.63610 11.07801 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.005527 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.937669 B = 5065.005955 C = 5166.930990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.212 3.788 3 H 0.005 0.995 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.679 5.679 13 C 0.121 3.879 14 H 0.103 0.897 15 C -0.174 4.174 16 C -0.053 4.053 17 C -0.054 4.054 18 C -0.152 4.152 19 C 0.093 3.907 20 F -0.141 7.141 21 C -0.151 4.151 22 C -0.011 4.011 23 Cl -0.058 7.058 24 H 0.036 0.964 25 H 0.005 0.995 26 H 0.085 0.915 27 H 0.259 0.741 28 H 0.317 0.683 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -3.270 12.466 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.106 3.894 3 H 0.023 0.977 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.308 5.308 13 C 0.010 3.990 14 H 0.121 0.879 15 C -0.232 4.232 16 C -0.054 4.054 17 C -0.073 4.073 18 C -0.171 4.171 19 C 0.074 3.926 20 F -0.120 7.120 21 C -0.170 4.170 22 C -0.039 4.039 23 Cl -0.029 7.029 24 H 0.055 0.945 25 H 0.024 0.976 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.026 -3.620 11.902 14.287 hybrid contribution 0.361 0.322 -0.542 0.726 sum 7.387 -3.298 11.360 13.946 Atomic orbital electron populations 1.21931 0.98111 1.00648 0.99115 1.19184 0.91522 0.92230 0.86513 0.97713 1.21200 1.30376 1.12032 0.89526 0.91992 1.24933 0.95377 0.95120 0.99002 1.69895 1.37375 1.23226 1.23217 0.86523 0.78590 0.79748 0.83074 1.19741 1.21135 1.21213 1.60765 1.01145 1.61263 1.07650 1.20420 0.92707 0.88898 0.96934 0.87894 1.22452 1.02194 0.98875 0.99721 1.20100 0.90893 0.97647 0.96809 1.20948 1.01476 0.91423 0.93434 1.21272 0.92240 1.01195 1.02418 1.17414 0.90434 0.87583 0.97195 1.91484 1.81687 1.60405 1.78396 1.20809 1.00858 0.94316 1.01066 1.20485 0.91757 0.92009 0.99617 1.98373 1.74816 1.48825 1.80892 0.94458 0.97584 0.89628 0.93163 0.86594 0.92992 0.92398 0.91777 0.83170 0.84538 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.93 37.16 0.33 -2.88 16 2 C 0.21 5.05 2.41 -68.86 -0.17 4.88 16 3 H 0.01 0.14 7.24 -51.93 -0.38 -0.24 16 4 C -0.49 -13.25 8.53 -34.44 -0.29 -13.54 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.21 11.39 55.43 0.63 -24.58 16 8 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.68 -13.15 4.84 -102.17 -0.49 -13.64 16 13 C 0.12 2.13 2.05 -68.87 -0.14 1.99 16 14 H 0.10 2.11 6.85 -51.93 -0.36 1.76 16 15 C -0.17 -2.64 9.08 37.16 0.34 -2.30 16 16 C -0.05 -0.83 5.09 -104.58 -0.53 -1.36 16 17 C -0.05 -0.77 9.33 -39.60 -0.37 -1.14 16 18 C -0.15 -1.94 10.03 -39.51 -0.40 -2.33 16 19 C 0.09 1.24 7.30 -39.42 -0.29 0.95 16 20 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 21 C -0.15 -2.02 9.81 -39.48 -0.39 -2.40 16 22 C -0.01 -0.17 6.31 -39.51 -0.25 -0.42 16 23 Cl -0.06 -0.84 26.62 -51.86 -1.38 -2.22 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.01 0.10 8.00 -51.93 -0.42 -0.31 16 26 H 0.09 2.19 6.25 -51.93 -0.32 1.87 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.32 5.45 7.61 -39.29 -0.30 5.15 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.82 7.26 -51.93 -0.38 0.44 16 31 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 32 H 0.15 2.04 6.89 -52.48 -0.36 1.68 16 33 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 301.26 15.07 4.54 4.54 Total: -1.00 -27.55 301.26 -8.07 -35.62 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.14 Total: 2.80 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.25 Total: -17.12 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.14 Total: -38.22 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.38 Total: -2.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.55 -8.07 -35.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129605296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.080 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds