Wall clock time and date at job start Mon Mar 30 2020 07:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46775 * 2 1 4 4 C 1.50704 * 109.46709 * 240.00731 * 2 1 3 5 5 H 1.07995 * 120.00027 * 239.99188 * 4 2 1 6 6 C 1.37875 * 119.99901 * 60.00371 * 4 2 1 7 7 N 1.31509 * 120.00398 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99919 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47034 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47498 * 119.99166 * 8 6 4 11 11 H 1.48507 * 109.46855 * 239.99573 * 8 6 4 12 12 N 1.46898 * 109.47524 * 120.00562 * 2 1 3 13 13 C 1.46896 * 111.00077 * 205.40955 * 12 2 1 14 14 H 1.08997 * 109.47293 * 326.82992 * 13 12 2 15 15 C 1.52998 * 109.47191 * 86.83140 * 13 12 2 16 16 C 1.50698 * 109.47195 * 206.82923 * 13 12 2 17 17 C 1.38245 * 119.98089 * 340.02388 * 16 13 12 18 18 C 1.38188 * 120.03944 * 179.97438 * 17 16 13 19 19 C 1.38491 * 119.99840 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.01716 * 180.02562 * 19 18 17 21 21 C 1.38410 * 119.96248 * 359.97438 * 19 18 17 22 22 C 1.38335 * 119.96196 * 0.02562 * 21 19 18 23 23 Cl 1.73608 * 120.00003 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.46724 * 174.09233 * 1 2 3 25 25 H 1.09001 * 109.46304 * 294.08854 * 1 2 3 26 26 H 1.09002 * 109.47322 * 54.08945 * 1 2 3 27 27 H 0.97002 * 120.00391 * 180.02562 * 7 6 4 28 28 H 1.00896 * 110.99587 * 329.36555 * 12 2 1 29 29 H 1.08999 * 109.47167 * 64.75353 * 15 13 12 30 30 H 1.08993 * 109.47448 * 184.75352 * 15 13 12 31 31 H 1.09004 * 109.46965 * 304.75674 * 15 13 12 32 32 H 1.08004 * 119.98454 * 359.97438 * 17 16 13 33 33 H 1.08000 * 119.99632 * 180.02562 * 18 17 16 34 34 H 1.07998 * 120.01858 * 180.29469 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1317 6 6 1.6992 -0.2390 -2.4828 7 7 0.9428 0.8300 -2.6033 8 14 2.3212 -1.1198 -4.0082 9 1 3.1462 -2.2866 -3.6042 10 1 1.1659 -1.5861 -4.8162 11 1 3.1464 -0.1867 -4.8166 12 7 2.0198 -0.6926 1.1993 13 6 3.3632 -0.2247 1.5658 14 1 3.9177 0.0311 0.6629 15 6 3.2465 1.0113 2.4599 16 6 4.0897 -1.3157 2.3093 17 6 3.3763 -2.3405 2.9027 18 6 4.0413 -3.3419 3.5843 19 6 5.4231 -3.3188 3.6739 20 9 6.0737 -4.2979 4.3398 21 6 6.1373 -2.2928 3.0798 22 6 5.4700 -1.2912 2.3978 23 17 6.3648 -0.0034 1.6529 24 1 -0.3633 -1.0222 -0.1058 25 1 -0.3632 0.4195 0.9382 26 1 -0.3634 0.6028 -0.8323 27 1 0.7082 1.1614 -3.4843 28 1 1.3762 -0.5825 1.9685 29 1 2.7666 0.7363 3.3992 30 1 4.2410 1.4083 2.6627 31 1 2.6484 1.7699 1.9549 32 1 2.2987 -2.3586 2.8334 33 1 3.4834 -4.1424 4.0472 34 1 7.2152 -2.2765 3.1450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129605296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:23 Heat of formation + Delta-G solvation = -46.902956 kcal Electronic energy + Delta-G solvation = -18546.560476 eV Core-core repulsion = 15418.782645 eV Total energy + Delta-G solvation = -3127.777831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.93098 -40.55632 -37.98567 -37.41789 -35.11464 -32.80557 -31.93686 -30.13086 -28.53968 -27.21684 -24.57115 -24.04042 -22.18611 -21.56920 -18.83987 -18.22367 -17.64785 -17.01592 -16.64532 -16.61692 -15.80767 -15.62853 -15.31810 -14.90883 -14.71021 -14.43391 -14.21838 -13.91618 -13.61079 -13.31484 -12.87079 -12.73837 -12.58545 -12.40497 -12.30116 -12.20549 -12.06981 -11.96177 -11.90730 -11.48221 -11.10066 -10.49094 -9.94663 -9.52551 -9.00975 -8.06906 -6.16075 0.01246 0.13595 1.06067 1.39412 1.42542 1.53404 2.44399 2.47277 3.20674 3.23457 3.44392 3.75607 3.91708 4.00709 4.30886 4.33538 4.38447 4.60544 4.71698 4.84727 4.92556 4.98860 5.01189 5.05380 5.14111 5.20902 5.26854 5.40697 5.57541 5.76509 5.78868 5.89599 6.34827 6.48143 6.97030 7.01342 7.52952 8.98046 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.005527 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.937669 B = 5065.005955 C = 5166.930990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.219 3.781 3 H -0.024 1.024 4 C -0.504 4.504 5 H 0.048 0.952 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.283 1.283 12 N -0.675 5.675 13 C 0.126 3.874 14 H 0.068 0.932 15 C -0.165 4.165 16 C -0.070 4.070 17 C -0.059 4.059 18 C -0.142 4.142 19 C 0.093 3.907 20 F -0.138 7.138 21 C -0.148 4.148 22 C -0.021 4.021 23 Cl -0.062 7.062 24 H 0.033 0.967 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.259 0.741 28 H 0.333 0.667 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 -4.498 13.675 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.111 3.889 3 H -0.006 1.006 4 C -0.543 4.543 5 H 0.066 0.934 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.774 3.226 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.209 1.209 12 N -0.305 5.305 13 C 0.015 3.985 14 H 0.086 0.914 15 C -0.224 4.224 16 C -0.071 4.071 17 C -0.077 4.077 18 C -0.161 4.161 19 C 0.073 3.927 20 F -0.117 7.117 21 C -0.167 4.167 22 C -0.048 4.048 23 Cl -0.033 7.033 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.151 0.849 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.364 -4.853 13.131 15.818 hybrid contribution 0.303 0.672 -0.850 1.125 sum 7.667 -4.181 12.281 15.069 Atomic orbital electron populations 1.21743 0.97417 1.00022 0.99569 1.18918 0.91948 0.90593 0.87453 1.00606 1.21433 1.30088 1.11653 0.91105 0.93391 1.25595 0.95712 0.95827 1.01517 1.70005 1.38200 1.24210 1.23704 0.85663 0.78148 0.78690 0.80080 1.19721 1.20553 1.20948 1.60592 1.02269 1.60639 1.07028 1.20266 0.91249 0.90696 0.96290 0.91422 1.22351 1.02690 0.97423 0.99915 1.19976 0.91338 0.97887 0.97937 1.21022 1.01762 0.91331 0.93589 1.21505 0.92154 1.01122 1.01289 1.17506 0.90749 0.87468 0.96954 1.91498 1.81678 1.60234 1.78282 1.20977 1.01825 0.93698 1.00250 1.20542 0.91540 0.92529 1.00228 1.98370 1.74805 1.49093 1.81068 0.94764 0.94514 0.92445 0.93155 0.84892 0.90833 0.91548 0.93306 0.82645 0.81816 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.93 71.98 0.64 -5.26 16 2 C 0.22 10.51 2.41 44.17 0.11 10.61 16 3 H -0.02 -1.26 7.24 -2.39 -0.02 -1.28 16 4 C -0.50 -27.47 8.53 25.60 0.22 -27.25 16 5 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -52.44 11.39 21.45 0.24 -52.20 16 8 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 N -0.67 -25.80 4.84 -477.16 -2.31 -28.11 16 13 C 0.13 4.39 2.05 44.17 0.09 4.48 16 14 H 0.07 2.85 6.85 -2.39 -0.02 2.84 16 15 C -0.17 -4.91 9.08 71.98 0.65 -4.25 16 16 C -0.07 -2.11 5.09 -19.84 -0.10 -2.21 16 17 C -0.06 -1.54 9.33 22.26 0.21 -1.33 16 18 C -0.14 -3.20 10.03 22.32 0.22 -2.97 16 19 C 0.09 2.21 7.30 22.37 0.16 2.38 16 20 F -0.14 -3.24 17.27 44.97 0.78 -2.47 16 21 C -0.15 -3.65 9.81 22.33 0.22 -3.43 16 22 C -0.02 -0.60 6.31 22.32 0.14 -0.46 16 23 Cl -0.06 -1.78 26.62 -2.72 -0.07 -1.85 16 24 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 1.40 8.00 -2.39 -0.02 1.39 16 26 H 0.06 2.96 6.25 -2.39 -0.01 2.94 16 27 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.33 10.92 7.61 -89.70 -0.68 10.23 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.84 7.26 -2.39 -0.02 1.82 16 31 H 0.05 1.58 7.53 -2.39 -0.02 1.57 16 32 H 0.16 3.86 6.89 -2.91 -0.02 3.84 16 33 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -58.69 301.26 4.12 -54.57 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.44 Total: 12.40 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.01 Total: -28.62 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.06 Total: -80.31 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -58.69 4.12 -54.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129605296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.671 kcal (2) G-P(sol) polarization free energy of solvation -58.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds