Wall clock time and date at job start Mon Mar 30 2020 07:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47135 * 2 1 4 4 C 1.50697 * 109.47491 * 120.00170 * 2 1 3 5 5 H 1.08000 * 119.99946 * 119.99596 * 4 2 1 6 6 C 1.37879 * 120.00144 * 300.00250 * 4 2 1 7 7 N 1.31513 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00090 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46872 * 89.99997 * 8 6 4 10 10 H 1.48498 * 109.47258 * 209.99851 * 8 6 4 11 11 H 1.48494 * 109.47452 * 330.00013 * 8 6 4 12 12 N 1.46902 * 109.47196 * 240.00118 * 2 1 3 13 13 C 1.46904 * 110.99979 * 307.60096 * 12 2 1 14 14 C 1.39844 * 110.99736 * 71.54681 * 12 2 1 15 15 C 1.39116 * 120.08700 * 280.87187 * 14 12 2 16 16 F 1.35100 * 120.05040 * 359.97438 * 15 14 12 17 17 C 1.38237 * 119.88893 * 179.77066 * 15 14 12 18 18 C 1.38333 * 120.05248 * 0.50470 * 17 15 14 19 19 C 1.38231 * 120.15804 * 359.74784 * 18 17 15 20 20 C 1.38194 * 120.11154 * 359.97438 * 19 18 17 21 21 C 1.50695 * 120.02458 * 179.97438 * 20 19 18 22 22 Cl 1.80307 * 109.47277 * 269.74472 * 21 20 19 23 23 H 1.09011 * 109.47054 * 173.24205 * 1 2 3 24 24 H 1.09003 * 109.47091 * 293.23478 * 1 2 3 25 25 H 1.08993 * 109.47487 * 53.24399 * 1 2 3 26 26 H 0.97000 * 120.00248 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46808 * 177.35782 * 13 12 2 28 28 H 1.08997 * 109.46991 * 297.35801 * 13 12 2 29 29 H 1.08996 * 109.47103 * 57.36067 * 13 12 2 30 30 H 1.08007 * 119.97532 * 180.22989 * 17 15 14 31 31 H 1.07990 * 119.92149 * 179.76689 * 18 17 15 32 32 H 1.07992 * 119.94402 * 180.02562 * 19 18 17 33 33 H 1.08994 * 109.47421 * 29.74650 * 21 20 19 34 34 H 1.09004 * 109.47417 * 149.74545 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.6299 -0.5459 4.4122 10 1 1.3433 -0.9495 5.1120 11 1 2.4861 -2.5663 3.7118 12 7 2.0197 -0.6925 -1.1995 13 6 1.4062 -2.0211 -1.3276 14 6 1.7971 0.0750 -2.3471 15 6 0.5339 0.1092 -2.9290 16 9 -0.4803 -0.5995 -2.3866 17 6 0.3173 0.8730 -4.0607 18 6 1.3574 1.5937 -4.6196 19 6 2.6146 1.5571 -4.0461 20 6 2.8373 0.8003 -2.9114 21 6 4.2087 0.7613 -2.2882 22 17 5.1561 -0.5954 -3.0045 23 1 -0.3634 -1.0206 -0.1209 24 1 -0.3633 0.4054 0.9443 25 1 -0.3634 0.6149 -0.8233 26 1 0.7089 1.1612 3.4844 27 1 1.7502 -2.4929 -2.2481 28 1 1.6919 -2.6370 -0.4749 29 1 0.3214 -1.9193 -1.3550 30 1 -0.6637 0.9035 -4.5115 31 1 1.1867 2.1867 -5.5058 32 1 3.4240 2.1214 -4.4850 33 1 4.7219 1.7036 -2.4797 34 1 4.1150 0.6107 -1.2127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235061517.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:50 Heat of formation + Delta-G solvation = -23.684098 kcal Electronic energy + Delta-G solvation = -19501.785520 eV Core-core repulsion = 16375.014535 eV Total energy + Delta-G solvation = -3126.770986 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -50.09986 -40.72467 -38.16984 -36.74027 -34.84629 -33.11939 -31.39849 -29.97369 -27.71989 -27.29830 -26.54046 -23.47939 -22.64521 -21.22329 -18.33327 -18.29666 -17.70032 -17.42120 -16.96184 -16.52228 -15.79229 -15.47392 -15.13081 -14.94886 -14.70770 -14.40524 -14.19986 -13.73808 -13.30478 -13.13327 -12.95161 -12.81614 -12.73013 -12.55419 -12.44062 -12.20937 -11.99457 -11.92904 -11.32572 -11.16529 -10.97790 -10.49306 -9.81154 -9.57925 -8.94495 -8.12371 -6.24302 0.06469 0.24450 1.42052 1.42972 1.53169 1.62433 2.41241 2.72901 3.15868 3.18686 3.29027 3.70160 3.94019 4.16673 4.29724 4.38037 4.48154 4.58194 4.64798 4.73103 4.88352 4.90893 5.03912 5.06273 5.12367 5.25755 5.37864 5.43604 5.49485 5.67037 5.74421 5.92839 6.16482 6.31931 6.76415 6.86316 7.44560 8.93025 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.007549 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.404556 B = 3708.246788 C = 4574.924228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.229 3.771 3 H 0.007 0.993 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.498 5.498 13 C 0.022 3.978 14 C 0.072 3.928 15 C 0.031 3.969 16 F -0.144 7.144 17 C -0.141 4.141 18 C -0.098 4.098 19 C -0.098 4.098 20 C -0.086 4.086 21 C 0.030 3.970 22 Cl -0.189 7.189 23 H 0.036 0.964 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.262 0.738 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.126 0.874 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 2.461 -14.506 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.124 3.876 3 H 0.025 0.975 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.217 5.217 13 C -0.125 4.125 14 C -0.024 4.024 15 C 0.010 3.990 16 F -0.123 7.123 17 C -0.160 4.160 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.088 4.088 21 C -0.033 4.033 22 Cl -0.162 7.162 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.170 0.830 31 H 0.191 0.809 32 H 0.183 0.817 33 H 0.144 0.856 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.055 2.349 -14.293 14.804 hybrid contribution -1.026 -0.655 1.310 1.789 sum 2.029 1.694 -12.983 13.250 Atomic orbital electron populations 1.22458 0.99972 0.98849 1.00616 1.19071 0.90087 0.92514 0.85895 0.97484 1.21286 1.30705 1.12562 0.90524 0.92472 1.25650 0.95305 0.95788 1.01712 1.70013 1.37614 1.24133 1.24072 0.85543 0.78032 0.79036 0.78941 1.20073 1.21034 1.19518 1.59936 1.58274 1.02763 1.00716 1.22531 0.98886 0.90016 1.01094 1.19320 0.91440 0.97430 0.94238 1.18817 0.84864 0.97947 0.97410 1.91365 1.58987 1.76604 1.85364 1.21462 1.02428 0.97487 0.94656 1.21351 0.91108 0.98395 1.00705 1.21419 0.98930 0.97802 0.93499 1.19706 0.93511 0.98632 0.96949 1.22973 0.89302 0.91250 0.99743 1.98692 1.75744 1.55230 1.86560 0.94510 0.92143 0.95759 0.92913 0.92301 0.91992 0.93282 0.83007 0.80873 0.81717 0.85587 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.06 7.33 71.98 0.53 -7.53 16 2 C 0.23 11.64 2.27 44.17 0.10 11.74 16 3 H 0.01 0.41 8.04 -2.39 -0.02 0.39 16 4 C -0.51 -28.08 8.02 25.60 0.21 -27.87 16 5 H 0.06 3.15 7.20 -2.91 -0.02 3.13 16 6 C 0.01 0.78 5.28 84.66 0.45 1.23 16 7 N -0.92 -52.65 11.29 21.45 0.24 -52.41 16 8 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.50 -21.56 3.65 -699.97 -2.56 -24.11 16 13 C 0.02 0.91 8.21 127.69 1.05 1.95 16 14 C 0.07 2.70 4.62 38.21 0.18 2.88 16 15 C 0.03 1.09 5.76 22.48 0.13 1.22 16 16 F -0.14 -5.60 11.19 44.97 0.50 -5.09 16 17 C -0.14 -3.66 10.02 22.29 0.22 -3.44 16 18 C -0.10 -1.98 10.04 22.29 0.22 -1.75 16 19 C -0.10 -2.19 9.69 22.26 0.22 -1.97 16 20 C -0.09 -2.65 5.27 -19.74 -0.10 -2.76 16 21 C 0.03 0.88 6.53 71.23 0.47 1.34 16 22 Cl -0.19 -5.64 29.13 -2.72 -0.08 -5.72 16 23 H 0.04 1.80 5.63 -2.38 -0.01 1.79 16 24 H 0.06 3.38 5.92 -2.39 -0.01 3.37 16 25 H 0.02 1.13 5.51 -2.39 -0.01 1.12 16 26 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 28 H 0.06 2.69 7.04 -2.39 -0.02 2.68 16 29 H 0.05 2.07 3.67 -2.39 -0.01 2.07 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.17 2.00 8.06 -2.92 -0.02 1.98 16 32 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.13 2.77 8.08 -2.39 -0.02 2.75 16 34 H 0.09 3.21 7.47 -2.39 -0.02 3.19 16 Total: -1.00 -62.69 288.33 4.91 -57.78 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.12 Total: 8.68 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.66 Total: -24.97 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -2.32 Total: -76.52 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.50 Total: -5.09 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 17 Polarization: -5.64 SS G_CDS: -0.08 Total: -5.72 kcal Total: -62.69 4.91 -57.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235061517.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.098 kcal (2) G-P(sol) polarization free energy of solvation -62.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds