Wall clock time and date at job start Mon Mar 30 2020 07:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46803 * 2 1 4 4 C 1.50700 * 109.46832 * 240.00133 * 2 1 3 5 5 H 1.08005 * 119.99389 * 245.45663 * 4 2 1 6 6 C 1.37871 * 120.00167 * 65.46483 * 4 2 1 7 7 N 1.31516 * 120.00363 * 9.54365 * 6 4 2 8 8 Si 1.86804 * 119.99925 * 189.55301 * 6 4 2 9 9 H 1.48497 * 109.47432 * 84.98597 * 8 6 4 10 10 H 1.48503 * 109.46912 * 204.99110 * 8 6 4 11 11 H 1.48506 * 109.46854 * 324.98908 * 8 6 4 12 12 N 1.46901 * 109.46972 * 119.99875 * 2 1 3 13 13 C 1.46894 * 110.99855 * 275.00014 * 12 2 1 14 14 H 1.09001 * 109.47676 * 35.00123 * 13 12 2 15 15 C 1.53002 * 109.47289 * 274.99812 * 13 12 2 16 16 C 1.50698 * 109.46970 * 155.00397 * 13 12 2 17 17 C 1.38242 * 120.00781 * 24.99504 * 16 13 12 18 18 C 1.38225 * 120.04840 * 180.02562 * 17 16 13 19 19 C 1.38257 * 120.06459 * 0.02562 * 18 17 16 20 20 C 1.38279 * 120.01104 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 120.02452 * 180.02562 * 20 19 18 22 22 C 1.38408 * 120.00898 * 205.02056 * 16 13 12 23 23 F 1.35098 * 120.02797 * 359.95287 * 22 16 13 24 24 H 1.08993 * 109.47350 * 183.67538 * 1 2 3 25 25 H 1.08996 * 109.47183 * 303.67769 * 1 2 3 26 26 H 1.09002 * 109.46883 * 63.67669 * 1 2 3 27 27 H 0.96996 * 120.00048 * 180.02562 * 7 6 4 28 28 H 1.00902 * 110.99863 * 38.95641 * 12 2 1 29 29 H 1.08996 * 109.47396 * 180.02562 * 15 13 12 30 30 H 1.09001 * 109.47016 * 300.00715 * 15 13 12 31 31 H 1.09005 * 109.47081 * 60.00227 * 15 13 12 32 32 H 1.07995 * 119.97339 * 359.75041 * 17 16 13 33 33 H 1.08001 * 119.96361 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.99652 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7946 -0.1773 -2.4796 7 7 1.2991 1.0356 -2.5936 8 14 2.1761 -1.1780 -4.0102 9 1 1.0242 -2.0611 -4.3241 10 1 2.4228 -0.2613 -5.1521 11 1 3.3847 -2.0071 -3.7709 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3468 14 1 1.2576 0.9330 2.2907 15 6 3.4111 0.9809 2.3224 16 6 1.9786 -0.5676 3.6258 17 6 2.3588 -1.8965 3.6503 18 6 2.2635 -2.6222 4.8228 19 6 1.7873 -2.0206 5.9729 20 6 1.4063 -0.6915 5.9514 21 17 0.8089 0.0644 7.3955 22 6 1.5021 0.0368 4.7762 23 9 1.1308 1.3355 4.7534 24 1 -0.3633 -1.0255 0.0659 25 1 -0.3633 0.5698 0.8552 26 1 -0.3633 0.4557 -0.9211 27 1 1.1316 1.4104 -3.4723 28 1 1.4495 -1.4979 1.4100 29 1 3.4579 1.6596 3.1740 30 1 4.2359 0.2705 2.3785 31 1 3.4863 1.5525 1.3973 32 1 2.7264 -2.3691 2.7515 33 1 2.5605 -3.6604 4.8402 34 1 1.7128 -2.5888 6.8883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309569586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:54 Heat of formation + Delta-G solvation = -32.488470 kcal Electronic energy + Delta-G solvation = -18532.554132 eV Core-core repulsion = 15405.401360 eV Total energy + Delta-G solvation = -3127.152772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.89038 -39.42127 -36.99766 -36.19696 -33.38530 -31.24772 -30.46366 -29.17290 -27.15063 -25.14143 -23.71659 -22.73567 -20.86876 -19.67845 -17.80681 -16.70232 -16.61126 -15.84342 -15.73015 -14.75761 -14.62639 -14.45587 -13.98772 -13.41887 -13.19958 -12.88754 -12.73550 -12.29396 -12.00073 -11.80837 -11.68860 -11.41715 -11.28487 -11.26735 -10.93992 -10.89102 -10.58679 -10.50279 -10.18802 -9.79638 -9.10674 -8.80959 -8.71057 -8.34229 -7.39915 -6.02255 -4.01944 0.94625 1.03199 1.90170 3.32217 3.38737 3.40978 3.41888 4.05976 4.42223 4.57965 4.80271 4.97909 5.07622 5.22178 5.30764 5.45497 5.78291 5.85306 5.87383 5.88094 6.16436 6.25610 6.32831 6.49288 6.60141 6.65190 6.72753 6.76924 6.99989 7.29266 7.56055 7.85507 8.16863 8.44381 8.54910 9.03791 9.61642 11.07156 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.004296 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.115004 B = 6515.662570 C = 6851.888300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.209 3.791 3 H 0.044 0.956 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.121 3.879 14 H 0.052 0.948 15 C -0.129 4.129 16 C -0.096 4.096 17 C -0.073 4.073 18 C -0.119 4.119 19 C -0.095 4.095 20 C -0.076 4.076 21 Cl -0.061 7.061 22 C 0.109 3.891 23 F -0.126 7.126 24 H 0.029 0.971 25 H 0.009 0.991 26 H 0.072 0.928 27 H 0.260 0.740 28 H 0.326 0.674 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -4.796 16.801 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.102 3.898 3 H 0.062 0.938 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.305 5.305 13 C 0.011 3.989 14 H 0.070 0.930 15 C -0.187 4.187 16 C -0.097 4.097 17 C -0.091 4.091 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.104 4.104 21 Cl -0.032 7.032 22 C 0.088 3.912 23 F -0.104 7.104 24 H 0.049 0.951 25 H 0.028 0.972 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.171 0.829 33 H 0.155 0.845 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.337 -4.441 16.611 17.247 hybrid contribution -1.058 -0.016 -0.499 1.170 sum 0.279 -4.457 16.112 16.720 Atomic orbital electron populations 1.22396 1.01097 0.98558 1.00293 1.19255 0.89079 0.95227 0.86270 0.93788 1.21048 1.34748 1.08239 0.89564 0.91925 1.24937 0.95599 0.94721 0.99001 1.69964 1.45586 1.14030 1.23738 0.86591 0.78652 0.80022 0.82596 1.20765 1.21480 1.19920 1.61065 1.58034 1.08611 1.02822 1.20370 0.98323 0.93701 0.86513 0.93047 1.21722 0.96151 0.99337 1.01493 1.20354 0.99044 0.95666 0.94673 1.21275 0.96194 0.92500 0.99127 1.21217 0.99916 1.00632 0.91980 1.20915 0.98788 0.91842 0.99789 1.20933 1.07019 0.94807 0.87615 1.98368 1.86703 1.82006 1.36093 1.17312 1.01342 0.79357 0.93174 1.91523 1.88889 1.33053 1.96927 0.95143 0.97160 0.90909 0.93014 0.85642 0.93657 0.92133 0.91283 0.82879 0.84457 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.03 37.16 0.34 -3.49 16 2 C 0.21 5.06 2.25 -68.86 -0.15 4.91 16 3 H 0.04 1.19 7.06 -51.93 -0.37 0.82 16 4 C -0.50 -13.32 8.76 -34.44 -0.30 -13.62 16 5 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 6 C 0.06 1.60 5.17 -17.82 -0.09 1.51 16 7 N -0.89 -25.42 12.16 55.43 0.67 -24.74 16 8 Si 0.89 21.09 29.55 -169.99 -5.02 16.07 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.67 -13.41 5.30 -102.17 -0.54 -13.95 16 13 C 0.12 2.15 2.41 -68.87 -0.17 1.98 16 14 H 0.05 1.00 6.79 -51.93 -0.35 0.65 16 15 C -0.13 -2.20 9.38 37.16 0.35 -1.85 16 16 C -0.10 -1.44 4.93 -104.56 -0.52 -1.96 16 17 C -0.07 -0.93 8.86 -39.58 -0.35 -1.28 16 18 C -0.12 -1.23 10.04 -39.58 -0.40 -1.63 16 19 C -0.09 -1.00 9.83 -39.56 -0.39 -1.38 16 20 C -0.08 -0.97 6.33 -39.44 -0.25 -1.22 16 21 Cl -0.06 -0.72 28.62 -51.86 -1.48 -2.21 16 22 C 0.11 1.61 7.22 -39.39 -0.28 1.33 16 23 F -0.13 -2.02 16.14 2.25 0.04 -1.98 16 24 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 25 H 0.01 0.21 7.47 -51.93 -0.39 -0.18 16 26 H 0.07 1.88 6.83 -51.93 -0.35 1.52 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.33 6.06 6.96 -39.29 -0.27 5.79 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.30 7.43 -51.93 -0.39 0.91 16 32 H 0.15 1.96 6.96 -52.49 -0.37 1.60 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -27.95 303.42 -8.12 -36.07 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.14 Total: 2.87 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.22 Total: -16.71 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.13 Total: -38.69 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.21 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.95 -8.12 -36.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309569586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.586 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds