Wall clock time and date at job start Mon Mar 30 2020 07:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46803 * 2 1 4 4 C 1.50700 * 109.46832 * 240.00133 * 2 1 3 5 5 H 1.08005 * 119.99389 * 245.45663 * 4 2 1 6 6 C 1.37871 * 120.00167 * 65.46483 * 4 2 1 7 7 N 1.31516 * 120.00363 * 9.54365 * 6 4 2 8 8 Si 1.86804 * 119.99925 * 189.55301 * 6 4 2 9 9 H 1.48497 * 109.47432 * 84.98597 * 8 6 4 10 10 H 1.48503 * 109.46912 * 204.99110 * 8 6 4 11 11 H 1.48506 * 109.46854 * 324.98908 * 8 6 4 12 12 N 1.46901 * 109.46972 * 119.99875 * 2 1 3 13 13 C 1.46894 * 110.99855 * 275.00014 * 12 2 1 14 14 H 1.09001 * 109.47676 * 35.00123 * 13 12 2 15 15 C 1.53002 * 109.47289 * 274.99812 * 13 12 2 16 16 C 1.50698 * 109.46970 * 155.00397 * 13 12 2 17 17 C 1.38242 * 120.00781 * 24.99504 * 16 13 12 18 18 C 1.38225 * 120.04840 * 180.02562 * 17 16 13 19 19 C 1.38257 * 120.06459 * 0.02562 * 18 17 16 20 20 C 1.38279 * 120.01104 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 120.02452 * 180.02562 * 20 19 18 22 22 C 1.38408 * 120.00898 * 205.02056 * 16 13 12 23 23 F 1.35098 * 120.02797 * 359.95287 * 22 16 13 24 24 H 1.08993 * 109.47350 * 183.67538 * 1 2 3 25 25 H 1.08996 * 109.47183 * 303.67769 * 1 2 3 26 26 H 1.09002 * 109.46883 * 63.67669 * 1 2 3 27 27 H 0.96996 * 120.00048 * 180.02562 * 7 6 4 28 28 H 1.00902 * 110.99863 * 38.95641 * 12 2 1 29 29 H 1.08996 * 109.47396 * 180.02562 * 15 13 12 30 30 H 1.09001 * 109.47016 * 300.00715 * 15 13 12 31 31 H 1.09005 * 109.47081 * 60.00227 * 15 13 12 32 32 H 1.07995 * 119.97339 * 359.75041 * 17 16 13 33 33 H 1.08001 * 119.96361 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.99652 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7946 -0.1773 -2.4796 7 7 1.2991 1.0356 -2.5936 8 14 2.1761 -1.1780 -4.0102 9 1 1.0242 -2.0611 -4.3241 10 1 2.4228 -0.2613 -5.1521 11 1 3.3847 -2.0071 -3.7709 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3468 14 1 1.2576 0.9330 2.2907 15 6 3.4111 0.9809 2.3224 16 6 1.9786 -0.5676 3.6258 17 6 2.3588 -1.8965 3.6503 18 6 2.2635 -2.6222 4.8228 19 6 1.7873 -2.0206 5.9729 20 6 1.4063 -0.6915 5.9514 21 17 0.8089 0.0644 7.3955 22 6 1.5021 0.0368 4.7762 23 9 1.1308 1.3355 4.7534 24 1 -0.3633 -1.0255 0.0659 25 1 -0.3633 0.5698 0.8552 26 1 -0.3633 0.4557 -0.9211 27 1 1.1316 1.4104 -3.4723 28 1 1.4495 -1.4979 1.4100 29 1 3.4579 1.6596 3.1740 30 1 4.2359 0.2705 2.3785 31 1 3.4863 1.5525 1.3973 32 1 2.7264 -2.3691 2.7515 33 1 2.5605 -3.6604 4.8402 34 1 1.7128 -2.5888 6.8883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309569586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:53 Heat of formation + Delta-G solvation = -47.711579 kcal Electronic energy + Delta-G solvation = -18533.214255 eV Core-core repulsion = 15405.401360 eV Total energy + Delta-G solvation = -3127.812895 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.04020 -40.49505 -38.29104 -37.40963 -35.14394 -32.95335 -31.43865 -30.44543 -28.83964 -27.19839 -24.91338 -23.79725 -22.41106 -21.25615 -19.00440 -18.29729 -17.80567 -17.17069 -16.87830 -16.60674 -16.07059 -15.44899 -15.42656 -14.90028 -14.44556 -14.32494 -14.01409 -13.77621 -13.57988 -13.29708 -13.01988 -12.95571 -12.77238 -12.59369 -12.35582 -12.32230 -12.25920 -12.07477 -11.96033 -11.53715 -11.07357 -10.44149 -9.84282 -9.71228 -9.08957 -8.10315 -6.17198 -0.03010 0.05018 0.94882 1.45784 1.46327 1.56157 2.44776 2.46706 3.03942 3.20696 3.40580 3.55334 3.97012 4.01358 4.22986 4.28323 4.43150 4.60318 4.68649 4.76511 4.85075 4.87522 4.94091 4.95792 5.07904 5.26222 5.28407 5.33278 5.45783 5.61889 5.73107 5.77904 6.21992 6.60928 6.80082 6.95717 7.50951 8.98369 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036444 B = 0.004296 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.115004 B = 6515.662570 C = 6851.888300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.510 4.510 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.267 1.267 12 N -0.668 5.668 13 C 0.125 3.875 14 H 0.026 0.974 15 C -0.123 4.123 16 C -0.112 4.112 17 C -0.077 4.077 18 C -0.100 4.100 19 C -0.081 4.081 20 C -0.082 4.082 21 Cl -0.056 7.056 22 C 0.086 3.914 23 F -0.142 7.142 24 H 0.043 0.957 25 H 0.020 0.980 26 H 0.044 0.956 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -7.368 18.218 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.106 3.894 3 H 0.025 0.975 4 C -0.549 4.549 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.191 1.191 12 N -0.299 5.299 13 C 0.015 3.985 14 H 0.044 0.956 15 C -0.181 4.181 16 C -0.114 4.114 17 C -0.095 4.095 18 C -0.118 4.118 19 C -0.099 4.099 20 C -0.109 4.109 21 Cl -0.027 7.027 22 C 0.065 3.935 23 F -0.120 7.120 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.170 0.830 33 H 0.194 0.806 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.771 -7.026 18.048 19.448 hybrid contribution -1.180 0.764 -0.827 1.631 sum 0.591 -6.263 17.221 18.334 Atomic orbital electron populations 1.22221 1.00492 0.99170 0.99227 1.18978 0.89407 0.93393 0.87583 0.97475 1.21369 1.34613 1.08194 0.90717 0.92038 1.25720 0.95579 0.95551 1.02008 1.70096 1.46720 1.15503 1.24269 0.85575 0.78749 0.78527 0.78792 1.20034 1.21554 1.19139 1.60906 1.57641 1.08893 1.02449 1.20220 0.97561 0.93303 0.87391 0.95566 1.21649 0.96342 0.99446 1.00642 1.20068 1.01453 0.96532 0.93313 1.21363 0.96206 0.91591 1.00382 1.21607 0.97745 1.01999 0.90460 1.21362 0.96621 0.90793 1.01172 1.21112 1.07092 0.95613 0.87131 1.98371 1.86653 1.82197 1.35461 1.17513 1.02745 0.79088 0.94125 1.91476 1.89277 1.34211 1.97065 0.93813 0.96084 0.93740 0.93126 0.84616 0.92229 0.91316 0.94008 0.82966 0.80551 0.81049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.21 9.03 71.98 0.65 -6.56 16 2 C 0.21 10.69 2.25 44.17 0.10 10.79 16 3 H 0.01 0.41 7.06 -2.39 -0.02 0.40 16 4 C -0.51 -27.60 8.76 25.60 0.22 -27.38 16 5 H 0.06 3.27 7.83 -2.91 -0.02 3.25 16 6 C 0.01 0.53 5.17 84.65 0.44 0.97 16 7 N -0.93 -53.91 12.16 21.45 0.26 -53.65 16 8 Si 0.96 43.34 29.55 68.60 2.03 45.37 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.67 -26.77 5.30 -477.16 -2.53 -29.30 16 13 C 0.13 4.53 2.41 44.17 0.11 4.64 16 14 H 0.03 1.08 6.79 -2.39 -0.02 1.06 16 15 C -0.12 -4.31 9.38 71.98 0.68 -3.63 16 16 C -0.11 -3.29 4.93 -19.82 -0.10 -3.39 16 17 C -0.08 -1.80 8.86 22.27 0.20 -1.60 16 18 C -0.10 -1.64 10.04 22.27 0.22 -1.41 16 19 C -0.08 -1.38 9.83 22.28 0.22 -1.16 16 20 C -0.08 -1.91 6.33 22.36 0.14 -1.77 16 21 Cl -0.06 -1.23 28.62 -2.72 -0.08 -1.31 16 22 C 0.09 2.48 7.22 22.39 0.16 2.64 16 23 F -0.14 -4.63 16.14 44.97 0.73 -3.91 16 24 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 25 H 0.02 0.91 7.47 -2.39 -0.02 0.89 16 26 H 0.04 2.35 6.83 -2.39 -0.02 2.33 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.34 12.28 6.96 -89.69 -0.62 11.65 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.65 7.43 -2.38 -0.02 1.64 16 32 H 0.15 3.56 6.96 -2.91 -0.02 3.54 16 33 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -61.50 303.42 3.94 -57.56 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.49 Total: 13.07 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.04 Total: -27.84 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.27 Total: -82.95 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.73 Total: -3.91 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -61.50 3.94 -57.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309569586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.853 kcal (2) G-P(sol) polarization free energy of solvation -61.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds