Wall clock time and date at job start Mon Mar 30 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00411 * 2 1 4 4 H 1.48496 * 109.47121 * 240.00051 * 3 2 1 5 5 H 1.48501 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47076 * 119.99707 * 3 2 1 7 7 C 1.37881 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47340 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47108 * 179.97438 * 12 11 10 14 14 C 1.39661 * 120.00152 * 179.97438 * 13 12 11 15 15 C 1.38898 * 120.05735 * 179.97438 * 14 13 12 16 16 C 1.38315 * 119.92658 * 179.97438 * 15 14 13 17 17 F 1.35096 * 119.97685 * 179.97438 * 16 15 14 18 18 C 1.38515 * 120.03620 * 0.02562 * 16 15 14 19 19 C 1.38339 * 120.11142 * 359.97438 * 18 16 15 20 20 Cl 1.73603 * 119.96265 * 179.97438 * 19 18 16 21 21 C 1.38249 * 120.07580 * 0.02591 * 19 18 16 22 22 H 0.97008 * 119.99763 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46765 * 60.00224 * 9 7 2 24 24 H 1.09001 * 109.47405 * 300.00191 * 9 7 2 25 25 H 1.08994 * 109.47451 * 60.00047 * 10 9 7 26 26 H 1.09001 * 109.46956 * 300.00246 * 10 9 7 27 27 H 1.08994 * 109.47220 * 59.99404 * 11 10 9 28 28 H 1.09004 * 109.46559 * 300.00203 * 11 10 9 29 29 H 1.09002 * 109.47296 * 59.99827 * 12 11 10 30 30 H 1.09001 * 109.46956 * 299.99744 * 12 11 10 31 31 H 0.96996 * 119.99827 * 359.97438 * 13 12 11 32 32 H 1.07998 * 120.03624 * 0.25048 * 15 14 13 33 33 H 1.07999 * 119.94143 * 179.97438 * 18 16 15 34 34 H 1.08000 * 120.01978 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4801 -4.9872 0.0033 12 6 2.4742 -6.1501 0.0037 13 7 1.7417 -7.4188 0.0048 14 6 2.4399 -8.6284 0.0048 15 6 1.7465 -9.8319 0.0064 16 6 2.4408 -11.0282 0.0059 17 9 1.7674 -12.1994 0.0080 18 6 3.8259 -11.0260 0.0043 19 6 4.5180 -9.8282 0.0027 20 17 6.2541 -9.8300 0.0013 21 6 3.8288 -8.6298 0.0032 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.8717 -3.6037 0.8926 26 1 2.8718 -3.6051 -0.8873 27 1 0.8537 -5.0454 -0.8868 28 1 0.8531 -5.0443 0.8931 29 1 3.1010 -6.0920 0.8936 30 1 3.1008 -6.0927 -0.8864 31 1 0.7717 -7.4187 0.0056 32 1 0.6666 -9.8336 0.0036 33 1 4.3664 -11.9610 0.0043 34 1 4.3701 -7.6952 0.0024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385836291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:47 Heat of formation + Delta-G solvation = -53.217668 kcal Electronic energy + Delta-G solvation = -17099.574881 eV Core-core repulsion = 13971.523223 eV Total energy + Delta-G solvation = -3128.051657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.16133 -39.67560 -37.08302 -36.18632 -34.22254 -32.37818 -30.75606 -29.88967 -27.84448 -24.92552 -23.30784 -22.42960 -21.37277 -20.24193 -18.19705 -17.08097 -16.40813 -16.24094 -15.90325 -15.62433 -15.39397 -14.95844 -14.60158 -14.42613 -13.75261 -13.50665 -13.05422 -12.66411 -12.30243 -11.92345 -11.89422 -11.72963 -11.58290 -11.28586 -11.14830 -10.79109 -10.66425 -10.54656 -10.06882 -9.77073 -9.39242 -9.12661 -8.97612 -8.38844 -7.77381 -6.04069 -4.06770 0.80679 1.08526 1.77750 3.16168 3.30509 3.30656 3.35257 3.37635 4.07245 4.42552 4.72556 4.81066 4.84426 4.98794 5.16012 5.22465 5.29638 5.32011 5.58549 5.77158 5.85523 5.92258 5.94917 5.98782 6.25487 6.41558 6.62082 6.76144 6.95493 7.08623 7.46391 7.61773 7.75352 7.95393 8.37734 9.00243 9.57676 11.07236 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.002790 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.379857 B =10032.819172 C =10953.148299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C -0.129 4.129 12 C 0.117 3.883 13 N -0.732 5.732 14 C 0.263 3.737 15 C -0.236 4.236 16 C 0.160 3.840 17 F -0.135 7.135 18 C -0.216 4.216 19 C 0.043 3.957 20 Cl -0.061 7.061 21 C -0.203 4.203 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.405 0.595 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.355 -21.900 0.007 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.167 4.167 12 C -0.006 4.006 13 N -0.359 5.359 14 C 0.155 3.845 15 C -0.259 4.259 16 C 0.140 3.860 17 F -0.113 7.113 18 C -0.238 4.238 19 C 0.016 3.984 20 Cl -0.032 7.032 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.240 0.760 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.439 -21.601 0.007 22.540 hybrid contribution 0.049 0.755 0.000 0.757 sum 6.488 -20.845 0.006 21.831 Atomic orbital electron populations 1.69952 1.06084 1.26765 1.50740 1.25031 0.94855 0.99303 0.95273 0.86654 0.79594 0.83087 0.78654 1.20208 1.21273 1.20213 1.21228 0.93027 0.91122 1.50773 0.92710 1.19084 0.93958 0.91309 0.97196 1.21567 0.99182 0.93176 1.00626 1.21870 0.98114 0.94390 1.02355 1.21674 0.95665 0.81917 1.01393 1.45002 1.08726 1.02595 1.79531 1.17306 0.90536 0.86050 0.90618 1.20538 1.00833 0.90017 1.14558 1.17010 0.89133 0.80768 0.99094 1.91511 1.80315 1.45885 1.93600 1.20597 0.92291 0.98326 1.12603 1.20206 0.84644 0.93714 0.99873 1.98385 1.09238 1.98927 1.96638 1.20562 0.92326 0.97883 1.11859 0.92916 0.96635 0.96647 0.93079 0.93086 0.91725 0.91720 0.91841 0.91832 0.75963 0.84404 0.84262 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.02 5.15 -26.73 -0.14 -2.16 16 11 C -0.13 -1.88 5.33 -26.73 -0.14 -2.02 16 12 C 0.12 1.38 4.91 -4.04 -0.02 1.36 16 13 N -0.73 -7.72 5.73 -58.64 -0.34 -8.06 16 14 C 0.26 2.83 6.65 -83.81 -0.56 2.27 16 15 C -0.24 -2.39 9.87 -39.31 -0.39 -2.77 16 16 C 0.16 1.68 7.30 -39.45 -0.29 1.39 16 17 F -0.13 -1.45 17.27 2.25 0.04 -1.41 16 18 C -0.22 -2.18 9.80 -39.44 -0.39 -2.57 16 19 C 0.04 0.45 6.31 -39.54 -0.25 0.20 16 20 Cl -0.06 -0.60 28.95 -51.86 -1.50 -2.10 16 21 C -0.20 -2.19 9.09 -39.34 -0.36 -2.55 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 30 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 31 H 0.40 3.75 8.48 -40.82 -0.35 3.40 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.14 1.46 6.73 -52.49 -0.35 1.11 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -29.10 312.19 -8.90 -38.01 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.45 Total: -1.81 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.08 Total: -19.80 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.40 Total: -33.96 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.10 -8.90 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385836291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.211 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds