Wall clock time and date at job start Mon Mar 30 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00411 * 2 1 4 4 H 1.48496 * 109.47121 * 240.00051 * 3 2 1 5 5 H 1.48501 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47076 * 119.99707 * 3 2 1 7 7 C 1.37881 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47340 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47340 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47108 * 179.97438 * 12 11 10 14 14 C 1.39661 * 120.00152 * 179.97438 * 13 12 11 15 15 C 1.38898 * 120.05735 * 179.97438 * 14 13 12 16 16 C 1.38315 * 119.92658 * 179.97438 * 15 14 13 17 17 F 1.35096 * 119.97685 * 179.97438 * 16 15 14 18 18 C 1.38515 * 120.03620 * 0.02562 * 16 15 14 19 19 C 1.38339 * 120.11142 * 359.97438 * 18 16 15 20 20 Cl 1.73603 * 119.96265 * 179.97438 * 19 18 16 21 21 C 1.38249 * 120.07580 * 0.02591 * 19 18 16 22 22 H 0.97008 * 119.99763 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46765 * 60.00224 * 9 7 2 24 24 H 1.09001 * 109.47405 * 300.00191 * 9 7 2 25 25 H 1.08994 * 109.47451 * 60.00047 * 10 9 7 26 26 H 1.09001 * 109.46956 * 300.00246 * 10 9 7 27 27 H 1.08994 * 109.47220 * 59.99404 * 11 10 9 28 28 H 1.09004 * 109.46559 * 300.00203 * 11 10 9 29 29 H 1.09002 * 109.47296 * 59.99827 * 12 11 10 30 30 H 1.09001 * 109.46956 * 299.99744 * 12 11 10 31 31 H 0.96996 * 119.99827 * 359.97438 * 13 12 11 32 32 H 1.07998 * 120.03624 * 0.25048 * 15 14 13 33 33 H 1.07999 * 119.94143 * 179.97438 * 18 16 15 34 34 H 1.08000 * 120.01978 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4801 -4.9872 0.0033 12 6 2.4742 -6.1501 0.0037 13 7 1.7417 -7.4188 0.0048 14 6 2.4399 -8.6284 0.0048 15 6 1.7465 -9.8319 0.0064 16 6 2.4408 -11.0282 0.0059 17 9 1.7674 -12.1994 0.0080 18 6 3.8259 -11.0260 0.0043 19 6 4.5180 -9.8282 0.0027 20 17 6.2541 -9.8300 0.0013 21 6 3.8288 -8.6298 0.0032 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.8717 -3.6037 0.8926 26 1 2.8718 -3.6051 -0.8873 27 1 0.8537 -5.0454 -0.8868 28 1 0.8531 -5.0443 0.8931 29 1 3.1010 -6.0920 0.8936 30 1 3.1008 -6.0927 -0.8864 31 1 0.7717 -7.4187 0.0056 32 1 0.6666 -9.8336 0.0036 33 1 4.3664 -11.9610 0.0043 34 1 4.3701 -7.6952 0.0024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385836291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:46 Heat of formation + Delta-G solvation = -68.151528 kcal Electronic energy + Delta-G solvation = -17100.222461 eV Core-core repulsion = 13971.523223 eV Total energy + Delta-G solvation = -3128.699238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.97491 -40.48748 -37.95554 -37.20533 -35.76174 -34.10279 -31.67189 -31.05286 -29.16550 -26.49397 -24.31227 -23.58831 -22.40094 -21.79981 -19.05778 -18.43037 -17.85784 -17.16294 -16.75755 -16.54805 -16.52723 -16.47231 -15.77756 -15.36760 -14.90793 -14.49112 -14.32147 -14.12148 -13.72907 -13.23416 -13.11387 -12.88211 -12.72202 -12.58044 -12.36019 -12.20054 -12.17875 -12.04888 -11.42766 -11.31851 -11.08256 -10.89826 -10.54078 -9.77174 -8.59092 -8.19848 -6.30629 0.00788 0.28328 0.99531 1.40727 1.43212 1.51102 2.29217 2.42165 2.50392 3.13635 3.27713 3.94500 3.98294 4.04518 4.07895 4.12317 4.25416 4.39580 4.53830 4.68104 4.82090 4.84902 4.97761 5.08509 5.13883 5.19197 5.27214 5.30381 5.55006 5.61174 5.78597 5.88100 6.14976 6.26302 6.68459 6.87472 7.38916 8.91676 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.002790 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.379857 B =10032.819172 C =10953.148299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.118 4.118 12 C 0.129 3.871 13 N -0.731 5.731 14 C 0.256 3.744 15 C -0.233 4.233 16 C 0.152 3.848 17 F -0.137 7.137 18 C -0.215 4.215 19 C 0.037 3.963 20 Cl -0.057 7.057 21 C -0.209 4.209 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.411 0.589 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 -22.373 0.006 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.156 4.156 12 C 0.005 3.995 13 N -0.358 5.358 14 C 0.148 3.852 15 C -0.257 4.257 16 C 0.131 3.869 17 F -0.116 7.116 18 C -0.237 4.237 19 C 0.009 3.991 20 Cl -0.027 7.027 21 C -0.233 4.233 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.248 0.752 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.600 -22.097 0.007 23.367 hybrid contribution -0.321 0.856 0.000 0.914 sum 7.280 -21.241 0.006 22.453 Atomic orbital electron populations 1.70087 1.07797 1.27787 1.51807 1.25981 0.95754 1.03369 0.94826 0.85539 0.78309 0.78229 0.79226 1.19138 1.20989 1.19152 1.21746 0.93660 0.92572 1.50358 0.92076 1.19022 0.94536 0.93181 0.94757 1.21358 0.98025 0.93054 1.01056 1.21650 0.98200 0.93362 1.02355 1.21416 0.94747 0.81391 1.01922 1.44833 1.09002 1.02081 1.79901 1.17336 0.90583 0.86124 0.91118 1.20688 1.01657 0.89658 1.13670 1.17108 0.89366 0.80819 0.99585 1.91505 1.80379 1.46021 1.93681 1.20765 0.92315 0.98816 1.11771 1.20263 0.84968 0.93769 1.00085 1.98386 1.08816 1.98922 1.96624 1.20679 0.92531 0.98195 1.11888 0.92821 0.99081 0.99093 0.92604 0.92611 0.91791 0.91786 0.91365 0.91354 0.75225 0.82990 0.83029 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.59 5.15 30.59 0.16 -3.43 16 11 C -0.12 -3.31 5.33 30.59 0.16 -3.14 16 12 C 0.13 2.82 4.91 86.38 0.42 3.24 16 13 N -0.73 -14.08 5.73 -339.45 -1.95 -16.02 16 14 C 0.26 5.05 6.65 38.21 0.25 5.30 16 15 C -0.23 -4.31 9.87 22.45 0.22 -4.09 16 16 C 0.15 2.94 7.30 22.35 0.16 3.10 16 17 F -0.14 -2.76 17.27 44.97 0.78 -1.99 16 18 C -0.22 -3.99 9.80 22.36 0.22 -3.77 16 19 C 0.04 0.71 6.31 22.30 0.14 0.85 16 20 Cl -0.06 -1.02 28.95 -2.72 -0.08 -1.10 16 21 C -0.21 -4.19 9.09 22.43 0.20 -3.99 16 22 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.45 7.95 -2.39 -0.02 1.43 16 30 H 0.07 1.45 7.95 -2.39 -0.02 1.44 16 31 H 0.41 6.88 8.48 -92.71 -0.79 6.10 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.14 2.73 6.73 -2.91 -0.02 2.71 16 Total: -1.00 -61.79 312.19 4.17 -57.61 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 0.32 Total: 6.46 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 2.79 Total: -34.51 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.66 Total: -72.16 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -61.79 4.17 -57.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385836291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.540 kcal (2) G-P(sol) polarization free energy of solvation -61.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds