Wall clock time and date at job start Mon Mar 30 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47460 * 2 1 4 4 C 1.52998 * 109.46993 * 239.99772 * 2 1 3 5 5 C 1.50696 * 109.47216 * 175.00672 * 4 2 1 6 6 H 1.08004 * 120.00101 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00438 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00053 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00214 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47234 * 60.00213 * 9 7 5 11 11 H 1.48504 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47412 * 299.99632 * 9 7 5 13 13 N 1.46900 * 109.46767 * 120.00081 * 2 1 3 14 14 C 1.46908 * 111.00002 * 274.99814 * 13 2 1 15 15 C 1.50700 * 109.47236 * 180.02562 * 14 13 2 16 16 C 1.38262 * 119.96706 * 89.99589 * 15 14 13 17 17 C 1.38198 * 120.04626 * 179.74203 * 16 15 14 18 18 C 1.38444 * 119.98692 * 0.26289 * 17 16 15 19 19 F 1.35102 * 120.02813 * 179.97438 * 18 17 16 20 20 C 1.38550 * 119.93890 * 359.97438 * 18 17 16 21 21 Cl 1.73601 * 120.02459 * 180.02562 * 20 18 17 22 22 C 1.38211 * 119.96867 * 270.25443 * 15 14 13 23 23 H 1.09001 * 109.47017 * 300.00551 * 1 2 3 24 24 H 1.08998 * 109.46441 * 59.99931 * 1 2 3 25 25 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47197 * 294.99787 * 4 2 1 27 27 H 1.08994 * 109.47117 * 54.99993 * 4 2 1 28 28 H 0.97002 * 120.00148 * 180.02562 * 8 7 5 29 29 H 1.00907 * 111.00112 * 151.04549 * 13 2 1 30 30 H 1.08993 * 109.47254 * 59.99835 * 14 13 2 31 31 H 1.08998 * 109.46528 * 300.00260 * 14 13 2 32 32 H 1.08002 * 119.98060 * 0.02826 * 16 15 14 33 33 H 1.07996 * 120.00594 * 180.23512 * 17 16 15 34 34 H 1.08004 * 119.99368 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0790 -0.0857 -0.5395 7 6 4.2303 -1.1929 -2.3582 8 7 3.5764 -1.8371 -3.3000 9 14 6.0920 -1.0606 -2.4371 10 1 6.6845 -1.6868 -1.2280 11 1 6.5870 -1.7608 -3.6495 12 1 6.4846 0.3703 -2.4964 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2226 2.3470 15 6 2.5884 -0.5215 3.5558 16 6 3.9451 -0.5730 3.8173 17 6 4.4105 -1.2504 4.9283 18 6 3.5182 -1.8826 5.7773 19 9 3.9723 -2.5455 6.8634 20 6 2.1591 -1.8348 5.5121 21 17 1.0382 -2.6262 6.5755 22 6 1.6962 -1.1563 4.3992 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.7517 -1.7716 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 4.0608 -2.2439 -4.0354 29 1 2.9173 -1.1206 1.0288 30 1 1.0871 0.6164 2.5526 31 1 2.7588 1.0461 2.1182 32 1 4.6414 -0.0795 3.1553 33 1 5.4701 -1.2870 5.1339 34 1 0.6369 -1.1186 4.1918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:58 Heat of formation + Delta-G solvation = -44.486671 kcal Electronic energy + Delta-G solvation = -17943.455995 eV Core-core repulsion = 14815.782942 eV Total energy + Delta-G solvation = -3127.673053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.03082 -39.41708 -36.88328 -36.37093 -33.11944 -31.86221 -31.04797 -29.04271 -27.44534 -24.83218 -23.26167 -22.96204 -21.29813 -19.50618 -17.87555 -16.78243 -16.39801 -16.08998 -15.84189 -15.08190 -14.75698 -14.40125 -14.16215 -13.92424 -13.46334 -13.12626 -12.98142 -12.44558 -11.99723 -11.79232 -11.71305 -11.46351 -11.42967 -11.25885 -11.13119 -10.85867 -10.69846 -10.56366 -10.26750 -9.33932 -9.14523 -9.06651 -8.66752 -8.43441 -7.76849 -6.07125 -4.11000 0.87109 1.00351 1.89693 3.26789 3.32892 3.33276 3.33623 3.98640 4.38578 4.52650 4.63233 4.95122 5.09160 5.11480 5.31919 5.32641 5.68128 5.72387 5.81293 5.86687 5.95901 6.00642 6.15546 6.23856 6.41307 6.46535 6.60476 6.87269 6.87916 7.42863 7.57318 7.90777 7.96179 8.15565 8.30902 8.94726 9.53439 11.03659 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.004469 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.188908 B = 6264.158739 C = 7156.731488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.031 0.969 4 C 0.020 3.980 5 C -0.527 4.527 6 H 0.051 0.949 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.095 3.905 15 C -0.067 4.067 16 C -0.079 4.079 17 C -0.141 4.141 18 C 0.100 3.900 19 F -0.132 7.132 20 C -0.074 4.074 21 Cl -0.058 7.058 22 C -0.063 4.063 23 H 0.036 0.964 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.022 0.978 28 H 0.262 0.738 29 H 0.357 0.643 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 2.629 16.815 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.565 4.565 6 H 0.069 0.931 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.312 5.312 14 C -0.034 4.034 15 C -0.068 4.068 16 C -0.097 4.097 17 C -0.160 4.160 18 C 0.079 3.921 19 F -0.110 7.110 20 C -0.102 4.102 21 Cl -0.029 7.029 22 C -0.082 4.082 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.178 0.822 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.968 2.183 16.926 17.322 hybrid contribution 1.864 0.306 -0.075 1.890 sum -1.104 2.488 16.851 17.069 Atomic orbital electron populations 1.21804 0.96594 1.01441 0.99563 1.21650 0.93445 0.95930 0.91155 0.95088 1.19280 0.95420 0.96261 0.90745 1.21106 0.92180 1.34783 1.08418 0.93115 1.24980 0.98215 0.95124 0.95675 1.69947 1.35647 1.35344 1.11890 0.86710 0.85891 0.78150 0.77550 1.20196 1.21234 1.20349 1.60657 1.35013 1.31545 1.04004 1.20935 1.00337 0.93404 0.88761 1.20000 0.92759 0.97784 0.96267 1.21142 0.95502 0.97271 0.95819 1.21094 0.99971 0.99640 0.95337 1.17401 0.90643 0.97386 0.86623 1.91517 1.89371 1.78358 1.51791 1.20968 0.89104 1.03541 0.96566 1.98374 1.61031 1.78954 1.64523 1.20870 1.01270 0.94806 0.91242 0.94473 0.93213 0.92560 0.95533 0.95946 0.92828 0.82187 0.90498 0.94266 0.84256 0.83928 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.42 37.16 0.35 -1.95 16 2 C 0.09 1.70 2.59 -67.71 -0.18 1.52 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.21 16 4 C 0.02 0.50 4.57 -27.89 -0.13 0.37 16 5 C -0.53 -13.89 8.12 -34.44 -0.28 -14.17 16 6 H 0.05 1.28 7.49 -52.48 -0.39 0.89 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 13 N -0.68 -12.00 6.30 -107.99 -0.68 -12.68 16 14 C 0.09 1.33 5.61 -4.97 -0.03 1.30 16 15 C -0.07 -0.87 5.39 -104.62 -0.56 -1.43 16 16 C -0.08 -0.94 9.70 -39.59 -0.38 -1.33 16 17 C -0.14 -1.62 10.03 -39.52 -0.40 -2.02 16 18 C 0.10 1.27 7.28 -39.39 -0.29 0.98 16 19 F -0.13 -1.72 16.84 2.25 0.04 -1.68 16 20 C -0.07 -0.94 6.33 -39.44 -0.25 -1.19 16 21 Cl -0.06 -0.69 28.62 -51.86 -1.48 -2.18 16 22 C -0.06 -0.78 9.48 -39.56 -0.38 -1.16 16 23 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.36 6.97 7.20 -39.29 -0.28 6.69 16 30 H 0.08 1.00 7.38 -51.93 -0.38 0.61 16 31 H 0.04 0.55 8.00 -51.93 -0.42 0.13 16 32 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -28.05 310.24 -8.71 -36.76 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.36 Total: 1.95 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.61 Total: -17.46 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.06 Total: -37.83 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.05 -8.71 -36.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.727 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds