Wall clock time and date at job start Mon Mar 30 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47460 * 2 1 4 4 C 1.52998 * 109.46993 * 239.99772 * 2 1 3 5 5 C 1.50696 * 109.47216 * 175.00672 * 4 2 1 6 6 H 1.08004 * 120.00101 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00438 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00053 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00214 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47234 * 60.00213 * 9 7 5 11 11 H 1.48504 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47412 * 299.99632 * 9 7 5 13 13 N 1.46900 * 109.46767 * 120.00081 * 2 1 3 14 14 C 1.46908 * 111.00002 * 274.99814 * 13 2 1 15 15 C 1.50700 * 109.47236 * 180.02562 * 14 13 2 16 16 C 1.38262 * 119.96706 * 89.99589 * 15 14 13 17 17 C 1.38198 * 120.04626 * 179.74203 * 16 15 14 18 18 C 1.38444 * 119.98692 * 0.26289 * 17 16 15 19 19 F 1.35102 * 120.02813 * 179.97438 * 18 17 16 20 20 C 1.38550 * 119.93890 * 359.97438 * 18 17 16 21 21 Cl 1.73601 * 120.02459 * 180.02562 * 20 18 17 22 22 C 1.38211 * 119.96867 * 270.25443 * 15 14 13 23 23 H 1.09001 * 109.47017 * 300.00551 * 1 2 3 24 24 H 1.08998 * 109.46441 * 59.99931 * 1 2 3 25 25 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47197 * 294.99787 * 4 2 1 27 27 H 1.08994 * 109.47117 * 54.99993 * 4 2 1 28 28 H 0.97002 * 120.00148 * 180.02562 * 8 7 5 29 29 H 1.00907 * 111.00112 * 151.04549 * 13 2 1 30 30 H 1.08993 * 109.47254 * 59.99835 * 14 13 2 31 31 H 1.08998 * 109.46528 * 300.00260 * 14 13 2 32 32 H 1.08002 * 119.98060 * 0.02826 * 16 15 14 33 33 H 1.07996 * 120.00594 * 180.23512 * 17 16 15 34 34 H 1.08004 * 119.99368 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0790 -0.0857 -0.5395 7 6 4.2303 -1.1929 -2.3582 8 7 3.5764 -1.8371 -3.3000 9 14 6.0920 -1.0606 -2.4371 10 1 6.6845 -1.6868 -1.2280 11 1 6.5870 -1.7608 -3.6495 12 1 6.4846 0.3703 -2.4964 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2226 2.3470 15 6 2.5884 -0.5215 3.5558 16 6 3.9451 -0.5730 3.8173 17 6 4.4105 -1.2504 4.9283 18 6 3.5182 -1.8826 5.7773 19 9 3.9723 -2.5455 6.8634 20 6 2.1591 -1.8348 5.5121 21 17 1.0382 -2.6262 6.5755 22 6 1.6962 -1.1563 4.3992 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.7517 -1.7716 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 4.0608 -2.2439 -4.0354 29 1 2.9173 -1.1206 1.0288 30 1 1.0871 0.6164 2.5526 31 1 2.7588 1.0461 2.1182 32 1 4.6414 -0.0795 3.1553 33 1 5.4701 -1.2870 5.1339 34 1 0.6369 -1.1186 4.1918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:58 Heat of formation + Delta-G solvation = -59.585023 kcal Electronic energy + Delta-G solvation = -17944.110708 eV Core-core repulsion = 14815.782942 eV Total energy + Delta-G solvation = -3128.327767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.01546 -40.39820 -38.16467 -37.51305 -34.91918 -33.31336 -31.98647 -30.34165 -29.23356 -26.08194 -24.79708 -24.18421 -22.34161 -21.09660 -18.83927 -18.47560 -17.76181 -17.19724 -16.82977 -16.55082 -16.30456 -15.90384 -15.19104 -14.90098 -14.66705 -14.48511 -14.03742 -13.77603 -13.47402 -13.43807 -13.21522 -12.91802 -12.55460 -12.49152 -12.45821 -12.34110 -12.29576 -11.98994 -11.84195 -11.22184 -10.98354 -10.54064 -10.00592 -9.67545 -9.14906 -8.16151 -6.26705 -0.10053 0.07336 0.94901 1.42923 1.44403 1.51799 2.37037 2.42846 3.04024 3.16586 3.52119 3.62417 3.82305 4.08745 4.15831 4.30907 4.40620 4.59246 4.72240 4.75320 4.77606 4.88473 4.91373 5.06530 5.07522 5.26079 5.39152 5.43169 5.53790 5.57231 5.67263 5.87702 6.23282 6.41043 6.64318 6.89115 7.42383 8.95290 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.004469 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.188908 B = 6264.158739 C = 7156.731488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.097 3.903 3 H 0.032 0.968 4 C 0.025 3.975 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.682 5.682 14 C 0.098 3.902 15 C -0.075 4.075 16 C -0.080 4.080 17 C -0.136 4.136 18 C 0.089 3.911 19 F -0.136 7.136 20 C -0.083 4.083 21 Cl -0.056 7.056 22 C -0.064 4.064 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.046 0.954 26 H -0.005 1.005 27 H -0.006 1.006 28 H 0.262 0.738 29 H 0.345 0.655 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 3.523 18.201 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.013 4.013 3 H 0.050 0.950 4 C -0.012 4.012 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.189 1.189 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.315 5.315 14 C -0.030 4.030 15 C -0.076 4.076 16 C -0.099 4.099 17 C -0.155 4.155 18 C 0.069 3.931 19 F -0.115 7.115 20 C -0.111 4.111 21 Cl -0.027 7.027 22 C -0.083 4.083 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.070 0.930 29 H 0.164 0.836 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.067 3.093 18.341 18.715 hybrid contribution 1.546 0.023 -0.470 1.616 sum -0.521 3.115 17.872 18.149 Atomic orbital electron populations 1.21729 0.94533 1.01377 1.01105 1.21432 0.95071 0.95052 0.89713 0.94988 1.19152 0.94939 0.94696 0.92404 1.21515 0.93193 1.34013 1.08328 0.91921 1.25890 1.03224 0.94882 0.95415 1.70096 1.37612 1.36777 1.12750 0.85606 0.79933 0.78477 0.77663 1.18885 1.21570 1.19350 1.60659 1.34243 1.32419 1.04191 1.20962 1.01499 0.92919 0.87631 1.19937 0.93312 0.98329 0.96035 1.21325 0.95388 0.97116 0.96065 1.21327 1.01000 0.98600 0.94581 1.17618 0.90947 0.97725 0.86830 1.91506 1.89405 1.78511 1.52045 1.21072 0.89342 1.03823 0.96833 1.98373 1.60943 1.78913 1.64432 1.20961 1.01743 0.94552 0.91070 0.91551 0.93042 0.93434 0.98669 0.98761 0.92971 0.83585 0.89053 0.93691 0.83092 0.81667 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.42 71.98 0.68 -3.52 16 2 C 0.10 3.69 2.59 44.92 0.12 3.80 16 3 H 0.03 1.22 7.80 -2.39 -0.02 1.20 16 4 C 0.03 1.27 4.57 29.85 0.14 1.41 16 5 C -0.53 -28.08 8.12 25.60 0.21 -27.87 16 6 H 0.06 3.09 7.49 -2.91 -0.02 3.06 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 9 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 N -0.68 -23.30 6.30 -495.57 -3.12 -26.42 16 14 C 0.10 2.54 5.61 85.56 0.48 3.02 16 15 C -0.08 -1.78 5.39 -19.87 -0.11 -1.89 16 16 C -0.08 -1.74 9.70 22.27 0.22 -1.52 16 17 C -0.14 -2.81 10.03 22.31 0.22 -2.58 16 18 C 0.09 2.11 7.28 22.39 0.16 2.27 16 19 F -0.14 -3.36 16.84 44.97 0.76 -2.60 16 20 C -0.08 -1.99 6.33 22.36 0.14 -1.84 16 21 Cl -0.06 -1.26 28.62 -2.72 -0.08 -1.34 16 22 C -0.06 -1.48 9.48 22.28 0.21 -1.27 16 23 H 0.07 1.76 7.45 -2.39 -0.02 1.74 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 27 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.34 13.17 7.20 -89.69 -0.65 12.52 16 30 H 0.09 2.10 7.38 -2.39 -0.02 2.08 16 31 H 0.04 1.13 8.00 -2.39 -0.02 1.11 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -60.03 310.24 3.26 -56.77 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.46 Total: 13.63 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 2.93 Total: -29.32 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.84 Total: -81.47 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.76 Total: -2.60 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -60.03 3.26 -56.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.819 kcal (2) G-P(sol) polarization free energy of solvation -60.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds