Wall clock time and date at job start Mon Mar 30 2020 07:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 112.52493 * 2 1 4 4 S 1.81431 * 113.14688 * 230.19746 * 2 1 3 5 5 C 1.81425 * 73.13932 * 273.34539 * 4 2 1 6 6 C 1.53048 * 113.14567 * 129.80137 * 2 1 3 7 7 H 1.09002 * 113.18959 * 197.62094 * 6 2 1 8 8 N 1.46498 * 113.15039 * 327.10832 * 6 2 1 9 9 C 1.34777 * 119.99828 * 204.60100 * 8 6 2 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 6 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 6 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47009 * 59.99434 * 19 17 15 21 21 H 1.48498 * 109.47590 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46858 * 299.99875 * 19 17 15 23 23 H 1.08998 * 109.46983 * 290.20012 * 1 2 3 24 24 H 1.09007 * 109.47032 * 50.19629 * 1 2 3 25 25 H 1.08994 * 109.47607 * 170.20102 * 1 2 3 26 26 H 1.08994 * 109.47077 * 189.79948 * 3 2 1 27 27 H 1.08995 * 109.46916 * 309.79882 * 3 2 1 28 28 H 1.09000 * 109.46834 * 69.80005 * 3 2 1 29 29 H 1.08991 * 113.15052 * 216.14149 * 5 4 2 30 30 H 1.09003 * 113.18426 * 86.65713 * 5 4 2 31 31 H 0.97001 * 120.00384 * 24.88547 * 8 6 2 32 32 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 33 33 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 34 34 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 35 35 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 36 36 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 37 37 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 38 38 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 39 39 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 40 40 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4133 0.0000 4 16 2.2432 -1.0679 -1.2816 5 6 1.9431 -2.1153 0.1690 6 6 2.1316 -0.9008 1.0812 7 1 3.1783 -0.6802 1.2902 8 7 1.3179 -0.9625 2.2979 9 6 1.8920 -1.2712 3.4775 10 8 3.0831 -1.4931 3.5327 11 6 1.0540 -1.3408 4.7281 12 6 1.9431 -1.7068 5.9181 13 6 1.0924 -1.7768 7.1879 14 6 1.9816 -2.1422 8.3781 15 6 1.1436 -2.2118 9.6287 16 1 0.0828 -2.0146 9.5795 17 6 1.7311 -2.5261 10.8357 18 7 3.0228 -2.7657 10.8957 19 14 0.6922 -2.6130 12.3857 20 1 -0.3602 -3.6472 12.2189 21 1 1.5555 -2.9663 13.5412 22 1 0.0555 -1.2937 12.6294 23 1 -0.3633 0.3548 0.9644 24 1 -0.3633 0.6579 -0.7895 25 1 -0.3634 -1.0126 -0.1749 26 1 3.1906 1.3610 -0.1749 27 1 1.6477 2.0008 -0.7895 28 1 1.9275 1.8848 0.9645 29 1 2.7067 -2.8801 0.3107 30 1 0.9329 -2.5233 0.2022 31 1 0.3653 -0.7851 2.2538 32 1 0.5880 -0.3719 4.9076 33 1 0.2803 -2.0987 4.6053 34 1 2.4094 -2.6756 5.7389 35 1 2.7165 -0.9484 6.0408 36 1 0.6264 -0.8078 7.3670 37 1 0.3187 -2.5349 7.0656 38 1 2.4479 -3.1111 8.1993 39 1 2.7549 -1.3837 8.5003 40 1 3.4361 -2.9872 11.7447 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588166324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:20 Heat of formation + Delta-G solvation = -46.484864 kcal Electronic energy + Delta-G solvation = -18289.143156 eV Core-core repulsion = 15422.720561 eV Total energy + Delta-G solvation = -2866.422595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.25547 -38.09638 -34.90878 -33.44115 -32.59901 -30.89313 -29.55127 -28.12673 -25.79616 -23.68577 -22.45995 -20.75531 -20.38094 -19.98234 -17.16039 -16.76740 -16.19841 -16.04824 -15.71813 -15.04753 -14.85000 -14.46195 -14.13960 -14.01852 -13.68512 -12.95589 -12.79197 -12.64390 -12.57246 -12.27431 -11.98291 -11.76191 -11.70481 -11.62982 -11.08047 -10.97672 -10.60355 -10.54339 -10.54224 -10.42235 -9.85325 -9.62427 -9.37936 -9.23041 -8.99634 -8.30473 -8.19514 -5.95301 -3.98039 1.31479 1.47636 2.59235 2.98144 3.35013 3.39571 3.41618 3.82269 4.19400 4.32770 4.43185 4.48615 4.72674 4.80290 5.03091 5.12167 5.23421 5.26172 5.29635 5.30429 5.33335 5.39960 5.40293 5.60388 5.72511 5.83082 6.11592 6.11926 6.28311 6.52719 6.82331 7.00255 7.18628 7.28862 7.73506 7.89655 8.05898 8.13972 8.47531 9.09543 9.65626 11.16008 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.052187 B = 0.002608 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.408300 B =10732.184315 C =10890.344981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 C -0.135 4.135 4 S -0.273 6.273 5 C -0.103 4.103 6 C 0.154 3.846 7 H 0.134 0.866 8 N -0.726 5.726 9 C 0.515 3.485 10 O -0.529 6.529 11 C -0.139 4.139 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.402 0.598 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 6.295 -24.333 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C -0.194 4.194 4 S -0.046 6.046 5 C -0.252 4.252 6 C 0.046 3.954 7 H 0.152 0.848 8 N -0.381 5.381 9 C 0.302 3.698 10 O -0.404 6.404 11 C -0.179 4.179 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.238 0.762 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.073 6.058 -25.530 26.725 hybrid contribution -1.417 -0.080 1.753 2.256 sum -6.490 5.978 -23.777 25.361 Atomic orbital electron populations 1.21891 0.90919 1.03496 1.03071 1.24072 0.99143 0.99178 0.92531 1.21838 1.01651 0.92876 1.02999 1.89038 1.81574 1.11297 1.22707 1.24966 1.06197 1.01935 0.92139 1.22542 0.98207 0.91366 0.83279 0.84817 1.46215 1.12120 1.72859 1.06926 1.21225 0.88905 0.74922 0.84717 1.90722 1.15863 1.47582 1.86191 1.21815 0.99524 1.03949 0.92587 1.21460 0.97780 1.02327 0.92626 1.21649 0.98496 1.00118 0.94530 1.19090 0.94714 0.96825 0.91074 1.21246 0.94699 1.47143 0.92886 0.92814 1.25037 0.94915 0.95509 0.99078 1.69961 1.09871 1.47798 1.25848 0.86673 0.80185 0.78460 0.82754 1.20283 1.21314 1.20287 0.90917 0.90850 0.91160 0.91018 0.91685 0.90852 0.87981 0.87473 0.76160 0.88994 0.89000 0.91759 0.91750 0.93468 0.93472 0.96599 0.96594 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.69 8.21 37.16 0.31 -0.38 16 2 C -0.04 -0.28 1.31 -90.60 -0.12 -0.39 16 3 C -0.14 -0.91 9.13 37.16 0.34 -0.57 16 4 S -0.27 -2.52 23.92 -107.50 -2.57 -5.10 16 5 C -0.10 -0.85 7.39 37.18 0.27 -0.58 16 6 C 0.15 1.34 3.26 -67.88 -0.22 1.12 16 7 H 0.13 1.45 7.46 -51.93 -0.39 1.06 16 8 N -0.73 -6.19 5.24 -63.99 -0.34 -6.53 16 9 C 0.51 6.44 7.83 -10.98 -0.09 6.35 16 10 O -0.53 -8.96 15.59 5.55 0.09 -8.87 16 11 C -0.14 -1.68 5.70 -27.89 -0.16 -1.84 16 12 C -0.10 -1.78 4.50 -26.74 -0.12 -1.91 16 13 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.07 0.28 6.81 -51.93 -0.35 -0.08 16 24 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 25 H 0.07 0.35 6.83 -51.93 -0.35 -0.01 16 26 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.11 0.74 7.12 -51.93 -0.37 0.37 16 31 H 0.40 2.29 6.56 -40.82 -0.27 2.02 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.19 8.10 -51.93 -0.42 0.76 16 35 H 0.06 1.18 8.10 -51.92 -0.42 0.76 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -33.25 337.48 -9.26 -42.50 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -6.76 Total: -3.27 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.47 Total: -13.88 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.40 Total: -33.24 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.57 Total: -5.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.25 -9.26 -42.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588166324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.983 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds