Wall clock time and date at job start Mon Mar 30 2020 07:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 112.52009 * 2 1 4 4 S 1.81422 * 113.14943 * 230.19922 * 2 1 3 5 5 C 1.81416 * 73.13750 * 273.34087 * 4 2 1 6 6 C 1.53039 * 89.89248 * 331.39584 * 5 4 2 7 7 H 1.09005 * 113.15088 * 148.18775 * 6 5 4 8 8 N 1.46499 * 113.15511 * 277.64557 * 6 5 4 9 9 C 1.34779 * 119.99872 * 255.49526 * 8 6 5 10 10 O 1.21286 * 120.00040 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00201 * 179.97438 * 9 8 6 12 12 C 1.52992 * 109.47592 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00183 * 19 17 15 23 23 H 1.09003 * 109.46935 * 290.19588 * 1 2 3 24 24 H 1.08996 * 109.47803 * 50.20188 * 1 2 3 25 25 H 1.09007 * 109.46746 * 170.20375 * 1 2 3 26 26 H 1.08995 * 109.46931 * 189.79769 * 3 2 1 27 27 H 1.09000 * 109.46702 * 309.80500 * 3 2 1 28 28 H 1.09003 * 109.47285 * 69.80133 * 3 2 1 29 29 H 1.09007 * 113.14863 * 216.13576 * 5 4 2 30 30 H 1.09003 * 113.15364 * 86.65951 * 5 4 2 31 31 H 0.96992 * 119.99793 * 75.49157 * 8 6 5 32 32 H 1.09002 * 109.47210 * 59.99599 * 11 9 8 33 33 H 1.09001 * 109.46665 * 299.99857 * 11 9 8 34 34 H 1.09002 * 109.47103 * 59.99616 * 12 11 9 35 35 H 1.08998 * 109.46862 * 300.00428 * 12 11 9 36 36 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 37 37 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 39 39 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 40 40 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1160 1.4134 0.0000 4 16 2.2432 -1.0678 -1.2816 5 6 1.9433 -2.1151 0.1691 6 6 2.1317 -0.9007 1.0811 7 1 1.5268 -0.9470 1.9868 8 7 3.5386 -0.6034 1.3612 9 6 4.0670 -0.9142 2.5615 10 8 3.3777 -1.4396 3.4099 11 6 5.5144 -0.6089 2.8495 12 6 5.8573 -1.0578 4.2713 13 6 7.3269 -0.7484 4.5634 14 6 7.6699 -1.1979 5.9851 15 6 9.1173 -0.8925 6.2730 16 1 9.7312 -0.4250 5.5174 17 6 9.6578 -1.2100 7.5011 18 7 8.9101 -1.7788 8.4214 19 14 11.4521 -0.8322 7.8577 20 1 11.5651 0.5301 8.4380 21 1 11.9851 -1.8270 8.8227 22 1 12.2323 -0.8991 6.5960 23 1 -0.3633 0.3548 0.9645 24 1 -0.3634 0.6577 -0.7895 25 1 -0.3633 -1.0128 -0.1749 26 1 3.1906 1.3611 -0.1749 27 1 1.6474 2.0009 -0.7895 28 1 1.9274 1.8849 0.9645 29 1 2.7070 -2.8800 0.3107 30 1 0.9330 -2.5230 0.2017 31 1 4.0897 -0.1829 0.6828 32 1 5.6850 0.4637 2.7564 33 1 6.1463 -1.1404 2.1379 34 1 5.6866 -2.1303 4.3648 35 1 5.2253 -0.5260 4.9825 36 1 7.4980 0.3241 4.4698 37 1 7.9585 -1.2806 3.8521 38 1 7.0383 -0.6661 6.6967 39 1 7.4989 -2.2703 6.0783 40 1 9.2902 -2.0018 9.2855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588166325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:23 Heat of formation + Delta-G solvation = -44.675740 kcal Electronic energy + Delta-G solvation = -18309.002366 eV Core-core repulsion = 15442.658220 eV Total energy + Delta-G solvation = -2866.344146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.23000 -38.06377 -34.89157 -33.52650 -32.59386 -30.88399 -29.59620 -27.81509 -25.70847 -23.68886 -22.29373 -21.04062 -20.31814 -19.95897 -17.00841 -16.96022 -16.16787 -15.97107 -15.72488 -14.87181 -14.60017 -14.42578 -14.14177 -14.00672 -13.57572 -13.43898 -12.80022 -12.68790 -12.58879 -12.27550 -11.92467 -11.86357 -11.69025 -11.58176 -11.03939 -10.97825 -10.54017 -10.50306 -10.40857 -10.22307 -9.89638 -9.61035 -9.35130 -9.22205 -8.97799 -8.29838 -8.17557 -5.94655 -3.97113 1.33772 1.52440 2.60715 2.88766 3.34519 3.40595 3.43850 3.84174 4.27865 4.39540 4.44290 4.49620 4.77990 4.84834 5.09309 5.13863 5.20020 5.27204 5.28758 5.32879 5.35875 5.40447 5.41059 5.59404 5.70391 5.85847 6.13771 6.19551 6.30421 6.54768 6.84171 7.02010 7.20494 7.35181 7.74864 7.90812 8.06804 8.17014 8.48672 9.10680 9.66553 11.16696 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.048949 B = 0.002674 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.891692 B =10467.554364 C =10575.834896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.034 4.034 3 C -0.134 4.134 4 S -0.292 6.292 5 C -0.098 4.098 6 C 0.148 3.852 7 H 0.123 0.877 8 N -0.715 5.715 9 C 0.516 3.484 10 O -0.532 6.532 11 C -0.138 4.138 12 C -0.103 4.103 13 C -0.111 4.111 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.407 0.593 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.227 4.546 -19.772 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C -0.193 4.193 4 S -0.066 6.066 5 C -0.248 4.248 6 C 0.040 3.960 7 H 0.141 0.859 8 N -0.368 5.368 9 C 0.304 3.696 10 O -0.407 6.407 11 C -0.178 4.178 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.244 0.756 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.173 4.063 -20.332 26.922 hybrid contribution 0.825 0.263 0.770 1.159 sum -16.348 4.326 -19.563 25.858 Atomic orbital electron populations 1.21858 0.90217 1.03412 1.03273 1.24022 0.99269 0.98846 0.92370 1.21789 1.01325 0.93002 1.03140 1.89041 1.81191 1.11518 1.24819 1.24914 1.06172 1.01568 0.92130 1.21499 0.84986 0.90891 0.98663 0.85895 1.45874 1.10171 1.64148 1.16646 1.21202 0.90655 0.77044 0.80651 1.90712 1.62459 1.41763 1.45758 1.21803 0.91038 1.03496 1.01456 1.21456 0.98423 1.01807 0.92432 1.21652 0.92515 0.99962 1.00689 1.19094 0.96083 0.96637 0.89906 1.21289 0.96143 1.39585 0.98840 0.92755 1.25041 0.97771 0.95332 0.96424 1.69971 1.35863 1.42319 1.05349 0.86615 0.85382 0.78022 0.78092 1.20707 1.21259 1.19918 0.90727 0.91061 0.91244 0.91325 0.91624 0.90710 0.88068 0.86964 0.75649 0.88964 0.88957 0.91789 0.91758 0.93451 0.93459 0.96598 0.96594 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 8.99 37.16 0.33 -0.37 16 2 C -0.03 -0.24 1.29 -90.60 -0.12 -0.36 16 3 C -0.13 -0.86 8.64 37.16 0.32 -0.53 16 4 S -0.29 -2.63 23.44 -107.50 -2.52 -5.15 16 5 C -0.10 -0.81 7.40 37.18 0.27 -0.53 16 6 C 0.15 1.28 3.47 -67.89 -0.24 1.04 16 7 H 0.12 1.16 7.46 -51.93 -0.39 0.78 16 8 N -0.71 -6.80 4.61 -64.01 -0.30 -7.09 16 9 C 0.52 6.69 7.83 -10.99 -0.09 6.61 16 10 O -0.53 -9.01 15.59 5.55 0.09 -8.92 16 11 C -0.14 -1.76 5.70 -27.89 -0.16 -1.91 16 12 C -0.10 -1.80 4.50 -26.74 -0.12 -1.92 16 13 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.36 6.82 -51.92 -0.35 0.01 16 26 H 0.07 0.44 6.81 -51.93 -0.35 0.09 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.11 0.73 7.12 -51.93 -0.37 0.36 16 31 H 0.41 3.19 7.07 -40.82 -0.29 2.90 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -33.15 337.38 -9.19 -42.34 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.79 Total: -2.57 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.48 Total: -13.78 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.44 Total: -33.90 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.52 Total: -5.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.15 -9.19 -42.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588166325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.337 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds