Wall clock time and date at job start Mon Mar 30 2020 07:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 112.52009 * 2 1 4 4 S 1.81422 * 113.14943 * 230.19922 * 2 1 3 5 5 C 1.81416 * 73.13750 * 273.34087 * 4 2 1 6 6 C 1.53039 * 89.89248 * 331.39584 * 5 4 2 7 7 H 1.09005 * 113.15088 * 148.18775 * 6 5 4 8 8 N 1.46499 * 113.15511 * 277.64557 * 6 5 4 9 9 C 1.34779 * 119.99872 * 255.49526 * 8 6 5 10 10 O 1.21286 * 120.00040 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00201 * 179.97438 * 9 8 6 12 12 C 1.52992 * 109.47592 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00183 * 19 17 15 23 23 H 1.09003 * 109.46935 * 290.19588 * 1 2 3 24 24 H 1.08996 * 109.47803 * 50.20188 * 1 2 3 25 25 H 1.09007 * 109.46746 * 170.20375 * 1 2 3 26 26 H 1.08995 * 109.46931 * 189.79769 * 3 2 1 27 27 H 1.09000 * 109.46702 * 309.80500 * 3 2 1 28 28 H 1.09003 * 109.47285 * 69.80133 * 3 2 1 29 29 H 1.09007 * 113.14863 * 216.13576 * 5 4 2 30 30 H 1.09003 * 113.15364 * 86.65951 * 5 4 2 31 31 H 0.96992 * 119.99793 * 75.49157 * 8 6 5 32 32 H 1.09002 * 109.47210 * 59.99599 * 11 9 8 33 33 H 1.09001 * 109.46665 * 299.99857 * 11 9 8 34 34 H 1.09002 * 109.47103 * 59.99616 * 12 11 9 35 35 H 1.08998 * 109.46862 * 300.00428 * 12 11 9 36 36 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 37 37 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 39 39 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 40 40 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1160 1.4134 0.0000 4 16 2.2432 -1.0678 -1.2816 5 6 1.9433 -2.1151 0.1691 6 6 2.1317 -0.9007 1.0811 7 1 1.5268 -0.9470 1.9868 8 7 3.5386 -0.6034 1.3612 9 6 4.0670 -0.9142 2.5615 10 8 3.3777 -1.4396 3.4099 11 6 5.5144 -0.6089 2.8495 12 6 5.8573 -1.0578 4.2713 13 6 7.3269 -0.7484 4.5634 14 6 7.6699 -1.1979 5.9851 15 6 9.1173 -0.8925 6.2730 16 1 9.7312 -0.4250 5.5174 17 6 9.6578 -1.2100 7.5011 18 7 8.9101 -1.7788 8.4214 19 14 11.4521 -0.8322 7.8577 20 1 11.5651 0.5301 8.4380 21 1 11.9851 -1.8270 8.8227 22 1 12.2323 -0.8991 6.5960 23 1 -0.3633 0.3548 0.9645 24 1 -0.3634 0.6577 -0.7895 25 1 -0.3633 -1.0128 -0.1749 26 1 3.1906 1.3611 -0.1749 27 1 1.6474 2.0009 -0.7895 28 1 1.9274 1.8849 0.9645 29 1 2.7070 -2.8800 0.3107 30 1 0.9330 -2.5230 0.2017 31 1 4.0897 -0.1829 0.6828 32 1 5.6850 0.4637 2.7564 33 1 6.1463 -1.1404 2.1379 34 1 5.6866 -2.1303 4.3648 35 1 5.2253 -0.5260 4.9825 36 1 7.4980 0.3241 4.4698 37 1 7.9585 -1.2806 3.8521 38 1 7.0383 -0.6661 6.6967 39 1 7.4989 -2.2703 6.0783 40 1 9.2902 -2.0018 9.2855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588166325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:22 Heat of formation + Delta-G solvation = -64.929401 kcal Electronic energy + Delta-G solvation = -18309.880630 eV Core-core repulsion = 15442.658220 eV Total energy + Delta-G solvation = -2867.222410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15100 -38.90232 -36.59361 -34.62212 -34.32106 -31.79902 -31.02939 -28.41489 -27.38324 -24.80306 -23.64179 -21.84244 -21.71201 -21.21219 -18.42009 -17.96021 -17.74033 -16.87644 -16.61905 -16.49369 -15.75209 -15.34953 -15.26439 -14.76778 -14.52463 -14.46266 -14.21233 -13.70156 -13.57693 -13.32414 -13.25893 -13.11645 -12.81995 -12.58639 -12.36927 -12.31966 -12.13717 -12.11188 -11.65492 -11.35543 -11.34689 -11.16310 -10.86376 -10.79688 -10.53961 -10.21855 -8.87998 -8.17933 -6.29886 0.72327 0.85119 1.40954 1.43068 1.54135 1.60425 2.03504 2.42669 3.14850 3.19937 3.65775 3.75450 3.85008 3.92104 4.07481 4.17739 4.22090 4.48333 4.51238 4.67863 4.70434 4.71750 4.78844 4.82980 4.87084 4.87312 4.90502 5.15262 5.21741 5.24497 5.34798 5.36006 5.43452 5.58966 5.80254 5.89765 6.26737 6.48957 6.88813 7.21820 7.39724 8.94307 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.048949 B = 0.002674 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.891692 B =10467.554364 C =10575.834896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.017 4.017 3 C -0.136 4.136 4 S -0.327 6.327 5 C -0.091 4.091 6 C 0.141 3.859 7 H 0.116 0.884 8 N -0.698 5.698 9 C 0.520 3.480 10 O -0.579 6.579 11 C -0.129 4.129 12 C -0.095 4.095 13 C -0.097 4.097 14 C 0.019 3.981 15 C -0.542 4.542 16 H 0.065 0.935 17 C -0.006 4.006 18 N -0.938 5.938 19 Si 0.968 3.032 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.260 1.260 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.418 0.582 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.059 0.941 38 H -0.014 1.014 39 H -0.016 1.016 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.683 5.891 -21.524 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C -0.194 4.194 4 S -0.100 6.100 5 C -0.240 4.240 6 C 0.032 3.968 7 H 0.134 0.866 8 N -0.351 5.351 9 C 0.308 3.692 10 O -0.458 6.458 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.134 4.134 14 C -0.018 4.018 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.184 1.184 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.148 0.852 31 H 0.256 0.744 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.004 0.996 39 H 0.003 0.997 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.632 5.431 -22.146 28.224 hybrid contribution 0.597 -0.168 1.314 1.453 sum -16.036 5.263 -20.832 26.811 Atomic orbital electron populations 1.21903 0.88817 1.03923 1.04153 1.24017 1.00137 0.98533 0.89995 1.21828 1.01379 0.92505 1.03705 1.89198 1.81722 1.13161 1.25963 1.24919 1.06884 1.00951 0.91283 1.21621 0.84265 0.91997 0.98901 0.86574 1.45670 1.10790 1.62925 1.15673 1.21161 0.90517 0.76482 0.81007 1.90706 1.63460 1.44174 1.47417 1.21678 0.91359 1.05431 0.98407 1.21240 0.96156 1.00428 0.95524 1.21453 0.94531 1.00680 0.96748 1.19054 0.95102 0.94373 0.93297 1.21768 0.97243 1.39563 0.99399 0.91647 1.26078 1.03112 0.94945 0.96219 1.70125 1.38314 1.43462 1.05935 0.85400 0.78960 0.78035 0.78362 1.19671 1.20958 1.18393 0.89692 0.90298 0.90973 0.91346 0.90795 0.90249 0.89147 0.85217 0.74362 0.86152 0.86601 0.93822 0.93531 0.92026 0.92263 0.99596 0.99713 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.99 71.98 0.65 -0.49 16 2 C -0.02 -0.20 1.29 -10.78 -0.01 -0.22 16 3 C -0.14 -1.42 8.64 71.98 0.62 -0.80 16 4 S -0.33 -5.41 23.44 -56.49 -1.32 -6.74 16 5 C -0.09 -1.39 7.40 72.00 0.53 -0.86 16 6 C 0.14 2.24 3.47 45.02 0.16 2.39 16 7 H 0.12 2.10 7.46 -2.38 -0.02 2.08 16 8 N -0.70 -12.13 4.61 -474.82 -2.19 -14.32 16 9 C 0.52 12.92 7.83 87.66 0.69 13.61 16 10 O -0.58 -19.75 15.59 -3.05 -0.05 -19.80 16 11 C -0.13 -3.03 5.70 29.84 0.17 -2.86 16 12 C -0.10 -3.34 4.50 30.59 0.14 -3.20 16 13 C -0.10 -3.90 5.15 30.59 0.16 -3.74 16 14 C 0.02 1.03 4.97 29.85 0.15 1.18 16 15 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 17 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 18 N -0.94 -58.98 13.29 21.45 0.28 -58.70 16 19 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 0.61 6.82 -2.38 -0.02 0.59 16 26 H 0.07 0.72 6.81 -2.39 -0.02 0.71 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.13 1.51 7.12 -2.39 -0.02 1.49 16 31 H 0.42 5.58 7.07 -92.71 -0.66 4.93 16 32 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -73.32 337.38 3.04 -70.27 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.35 Total: 8.52 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 3.94 Total: -26.05 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.90 Total: -73.01 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.80 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -1.32 Total: -6.74 kcal Total: -73.32 3.04 -70.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588166325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.344 kcal (2) G-P(sol) polarization free energy of solvation -73.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds