Wall clock time and date at job start Mon Mar 30 2020 07:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00360 * 2 1 4 4 H 1.48502 * 109.47136 * 269.99723 * 3 2 1 5 5 H 1.48496 * 109.47086 * 30.00080 * 3 2 1 6 6 H 1.48499 * 109.47418 * 149.99958 * 3 2 1 7 7 C 1.37885 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99937 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00166 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46649 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46838 * 185.40170 * 11 10 9 13 13 C 1.37000 * 126.50582 * 270.10850 * 12 11 10 14 14 C 1.34797 * 107.03568 * 179.97438 * 13 12 11 15 15 N 1.33858 * 108.39429 * 0.02562 * 14 13 12 16 16 C 1.31482 * 109.26072 * 359.97438 * 15 14 13 17 17 C 1.47828 * 125.84049 * 180.26352 * 16 15 14 18 18 C 1.39616 * 120.06266 * 160.81926 * 17 16 15 19 19 C 1.37786 * 119.93018 * 179.79004 * 18 17 16 20 20 C 1.39071 * 120.06701 * 0.49091 * 19 18 17 21 21 N 1.39475 * 119.93619 * 179.76413 * 20 19 18 22 22 C 1.39078 * 120.12938 * 359.74306 * 20 19 18 23 23 C 1.37776 * 120.06299 * 0.02562 * 22 20 19 24 24 H 0.97003 * 119.99970 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46811 * 59.99849 * 9 7 2 26 26 H 1.09001 * 109.47131 * 300.00082 * 9 7 2 27 27 H 1.08994 * 109.47229 * 60.00321 * 10 9 7 28 28 H 1.09001 * 109.47063 * 299.99855 * 10 9 7 29 29 H 1.09005 * 109.47229 * 65.40704 * 11 10 9 30 30 H 1.08993 * 109.47452 * 305.40327 * 11 10 9 31 31 H 1.08005 * 126.48262 * 359.97438 * 13 12 11 32 32 H 1.08002 * 125.80093 * 180.02562 * 14 13 12 33 33 H 1.07993 * 120.03790 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.96857 * 180.21265 * 19 18 17 35 35 H 0.96998 * 119.99875 * 179.97438 * 21 20 19 36 36 H 0.96999 * 119.99739 * 359.97438 * 21 20 19 37 37 H 1.07996 * 119.96709 * 179.97438 * 22 20 19 38 38 H 1.08003 * 120.02752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 7 6.0398 -4.0118 -0.1279 13 6 6.3086 -4.8816 0.8959 14 6 6.7329 -6.0319 0.3357 15 7 6.7282 -5.8809 -0.9943 16 6 6.3130 -4.6694 -1.2918 17 6 6.1622 -4.1163 -2.6544 18 6 5.3559 -2.9970 -2.8696 19 6 5.2207 -2.4811 -4.1401 20 6 5.8784 -3.0803 -5.2090 21 7 5.7357 -2.5587 -6.4947 22 6 6.6784 -4.1983 -4.9984 23 6 6.8211 -4.7157 -3.7295 24 1 -0.4850 0.8401 -0.0004 25 1 3.8744 -0.6802 0.8911 26 1 3.8752 -0.6806 -0.8888 27 1 3.6584 -3.1503 -0.8892 28 1 3.6577 -3.1507 0.8907 29 1 5.9140 -2.2094 0.9372 30 1 5.9155 -2.0411 -0.8348 31 1 6.2010 -4.6831 1.9521 32 1 7.0267 -6.9237 0.8693 33 1 4.8417 -2.5337 -2.0407 34 1 4.5999 -1.6133 -4.3068 35 1 6.1943 -2.9757 -7.2408 36 1 5.1780 -1.7791 -6.6426 37 1 7.1876 -4.6617 -5.8304 38 1 7.4422 -5.5842 -3.5667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:18 Heat of formation + Delta-G solvation = 79.298431 kcal Electronic energy + Delta-G solvation = -20040.030811 eV Core-core repulsion = 17075.911389 eV Total energy + Delta-G solvation = -2964.119422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.75133 -39.06400 -35.71790 -34.60898 -33.04246 -31.21433 -30.76414 -30.31468 -27.49733 -27.07009 -23.54489 -22.90368 -22.35890 -20.75311 -20.42666 -19.73190 -17.35467 -17.11358 -16.75147 -16.57846 -15.45931 -14.95023 -14.64283 -14.26492 -14.20262 -13.70927 -13.34592 -13.22327 -13.12510 -12.95380 -12.76929 -12.32000 -12.09680 -11.60960 -11.35008 -10.98312 -10.79813 -10.74972 -10.24727 -10.12089 -9.90397 -9.71930 -9.37033 -9.15388 -8.84792 -8.64049 -8.47664 -7.16784 -6.13366 -4.13041 1.27813 1.55910 2.50437 3.02828 3.22002 3.30692 3.31721 3.38969 3.80388 4.09668 4.35251 4.59706 4.89511 4.99096 5.07717 5.11528 5.19928 5.37089 5.50744 5.56668 5.59013 5.64147 5.79830 5.88853 6.09751 6.17402 6.26983 6.32224 6.43084 6.58211 6.60242 6.74938 6.87618 7.02548 7.09005 7.18977 7.39193 7.46989 7.65676 7.66759 8.32540 8.42656 8.91180 9.47461 10.99891 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.005978 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.160303 B = 4682.662739 C = 6320.405673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.123 4.123 11 C 0.088 3.912 12 N -0.446 5.446 13 C -0.052 4.052 14 C -0.034 4.034 15 N -0.491 5.491 16 C 0.254 3.746 17 C -0.074 4.074 18 C -0.072 4.072 19 C -0.192 4.192 20 C 0.221 3.779 21 N -0.877 5.877 22 C -0.203 4.203 23 C -0.032 4.032 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.014 0.986 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.396 0.604 36 H 0.399 0.601 37 H 0.122 0.878 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.850 -5.433 -7.467 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.161 4.161 11 C -0.034 4.034 12 N -0.127 5.127 13 C -0.186 4.186 14 C -0.184 4.184 15 N -0.209 5.209 16 C -0.005 4.005 17 C -0.078 4.078 18 C -0.092 4.092 19 C -0.214 4.214 20 C 0.116 3.884 21 N -0.415 5.415 22 C -0.226 4.226 23 C -0.052 4.052 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.189 0.811 32 H 0.184 0.816 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.224 0.776 36 H 0.227 0.773 37 H 0.139 0.861 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.876 -5.779 -7.934 17.822 hybrid contribution -0.084 1.654 0.428 1.711 sum 14.792 -4.124 -7.505 17.092 Atomic orbital electron populations 1.69908 1.06314 1.26999 1.50584 1.25019 0.94725 0.99114 0.94441 0.86806 0.80359 0.83705 0.78582 1.20187 1.21271 1.19008 1.21040 0.89046 0.94621 1.51404 0.90928 1.19540 0.97750 0.90911 0.96620 1.22000 0.89964 1.01287 1.02839 1.22487 0.97747 0.79028 1.04140 1.45828 1.47755 1.12879 1.06211 1.22736 1.09571 0.92006 0.94335 1.22161 1.07490 0.98382 0.90356 1.70375 1.20727 1.14964 1.14869 1.21287 1.03405 0.88891 0.86904 1.17336 1.03677 0.98460 0.88343 1.21723 0.95349 0.94132 0.97985 1.20546 1.05502 1.03633 0.91734 1.17931 0.92974 0.92071 0.85454 1.42463 1.56969 1.36022 1.06094 1.20449 1.05504 0.99088 0.97566 1.20842 0.96060 0.97689 0.90607 0.92604 0.96206 0.96746 0.91373 0.91532 0.89199 0.88692 0.81083 0.81617 0.83631 0.85535 0.77589 0.77302 0.86053 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.23 4.02 -27.88 -0.11 -0.34 16 10 C -0.12 -2.29 4.57 -26.73 -0.12 -2.41 16 11 C 0.09 1.35 5.26 -4.04 -0.02 1.32 16 12 N -0.45 -7.13 2.79 -114.28 -0.32 -7.44 16 13 C -0.05 -0.75 11.58 -16.46 -0.19 -0.94 16 14 C -0.03 -0.51 11.84 -17.89 -0.21 -0.72 16 15 N -0.49 -8.49 11.01 -11.22 -0.12 -8.61 16 16 C 0.25 4.33 7.58 -154.65 -1.17 3.16 16 17 C -0.07 -1.18 5.85 -104.95 -0.61 -1.79 16 18 C -0.07 -1.13 8.39 -39.23 -0.33 -1.46 16 19 C -0.19 -2.68 9.87 -39.44 -0.39 -3.07 16 20 C 0.22 2.69 6.75 -83.76 -0.57 2.12 16 21 N -0.88 -7.60 9.08 32.44 0.29 -7.30 16 22 C -0.20 -2.45 9.87 -39.44 -0.39 -2.84 16 23 C -0.03 -0.44 9.68 -39.24 -0.38 -0.82 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.30 7.53 -51.93 -0.39 -0.09 16 27 H 0.07 1.35 6.77 -51.93 -0.35 0.99 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.40 5.95 -51.93 -0.31 1.09 16 31 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 32 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.15 2.41 2.89 -52.49 -0.15 2.26 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.40 2.55 8.84 -40.82 -0.36 2.19 16 36 H 0.40 2.97 8.84 -40.82 -0.36 2.61 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.13 1.74 7.94 -52.48 -0.42 1.32 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -32.43 316.23 -9.04 -41.47 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.84 Total: 7.99 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -4.93 Total: -20.62 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.63 Total: -49.70 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.43 -9.04 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.768 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds