Wall clock time and date at job start Mon Mar 30 2020 07:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00360 * 2 1 4 4 H 1.48502 * 109.47136 * 269.99723 * 3 2 1 5 5 H 1.48496 * 109.47086 * 30.00080 * 3 2 1 6 6 H 1.48499 * 109.47418 * 149.99958 * 3 2 1 7 7 C 1.37885 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99937 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00166 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46649 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46838 * 185.40170 * 11 10 9 13 13 C 1.37000 * 126.50582 * 270.10850 * 12 11 10 14 14 C 1.34797 * 107.03568 * 179.97438 * 13 12 11 15 15 N 1.33858 * 108.39429 * 0.02562 * 14 13 12 16 16 C 1.31482 * 109.26072 * 359.97438 * 15 14 13 17 17 C 1.47828 * 125.84049 * 180.26352 * 16 15 14 18 18 C 1.39616 * 120.06266 * 160.81926 * 17 16 15 19 19 C 1.37786 * 119.93018 * 179.79004 * 18 17 16 20 20 C 1.39071 * 120.06701 * 0.49091 * 19 18 17 21 21 N 1.39475 * 119.93619 * 179.76413 * 20 19 18 22 22 C 1.39078 * 120.12938 * 359.74306 * 20 19 18 23 23 C 1.37776 * 120.06299 * 0.02562 * 22 20 19 24 24 H 0.97003 * 119.99970 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46811 * 59.99849 * 9 7 2 26 26 H 1.09001 * 109.47131 * 300.00082 * 9 7 2 27 27 H 1.08994 * 109.47229 * 60.00321 * 10 9 7 28 28 H 1.09001 * 109.47063 * 299.99855 * 10 9 7 29 29 H 1.09005 * 109.47229 * 65.40704 * 11 10 9 30 30 H 1.08993 * 109.47452 * 305.40327 * 11 10 9 31 31 H 1.08005 * 126.48262 * 359.97438 * 13 12 11 32 32 H 1.08002 * 125.80093 * 180.02562 * 14 13 12 33 33 H 1.07993 * 120.03790 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.96857 * 180.21265 * 19 18 17 35 35 H 0.96998 * 119.99875 * 179.97438 * 21 20 19 36 36 H 0.96999 * 119.99739 * 359.97438 * 21 20 19 37 37 H 1.07996 * 119.96709 * 179.97438 * 22 20 19 38 38 H 1.08003 * 120.02752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 7 6.0398 -4.0118 -0.1279 13 6 6.3086 -4.8816 0.8959 14 6 6.7329 -6.0319 0.3357 15 7 6.7282 -5.8809 -0.9943 16 6 6.3130 -4.6694 -1.2918 17 6 6.1622 -4.1163 -2.6544 18 6 5.3559 -2.9970 -2.8696 19 6 5.2207 -2.4811 -4.1401 20 6 5.8784 -3.0803 -5.2090 21 7 5.7357 -2.5587 -6.4947 22 6 6.6784 -4.1983 -4.9984 23 6 6.8211 -4.7157 -3.7295 24 1 -0.4850 0.8401 -0.0004 25 1 3.8744 -0.6802 0.8911 26 1 3.8752 -0.6806 -0.8888 27 1 3.6584 -3.1503 -0.8892 28 1 3.6577 -3.1507 0.8907 29 1 5.9140 -2.2094 0.9372 30 1 5.9155 -2.0411 -0.8348 31 1 6.2010 -4.6831 1.9521 32 1 7.0267 -6.9237 0.8693 33 1 4.8417 -2.5337 -2.0407 34 1 4.5999 -1.6133 -4.3068 35 1 6.1943 -2.9757 -7.2408 36 1 5.1780 -1.7791 -6.6426 37 1 7.1876 -4.6617 -5.8304 38 1 7.4422 -5.5842 -3.5667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:17 Heat of formation + Delta-G solvation = 59.433781 kcal Electronic energy + Delta-G solvation = -20040.892207 eV Core-core repulsion = 17075.911389 eV Total energy + Delta-G solvation = -2964.980818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.91397 -40.06889 -37.15642 -35.56886 -34.89489 -32.90716 -31.80703 -31.35070 -29.04090 -28.24328 -25.17778 -23.95179 -23.43713 -22.25894 -21.76775 -20.90214 -19.04093 -18.23546 -18.02561 -17.56597 -16.63944 -16.30023 -16.17847 -15.82493 -15.23856 -14.83071 -14.73346 -14.47935 -14.23910 -14.16804 -14.10597 -13.91392 -13.48386 -12.99707 -12.78541 -12.58617 -12.06588 -11.86867 -11.83326 -11.72895 -11.58769 -11.40713 -10.93084 -10.77238 -10.48514 -9.90473 -9.52606 -8.29400 -8.15282 -6.35120 0.19273 0.51140 1.37525 1.37823 1.39904 1.51097 1.86673 2.24584 2.36307 2.99239 3.03708 3.06221 3.49549 3.72507 3.89849 4.00743 4.03849 4.10861 4.30722 4.45390 4.47325 4.55519 4.67457 4.72903 4.81199 4.83778 4.91517 5.12813 5.26649 5.33957 5.41050 5.43901 5.52432 5.61939 5.66957 5.88352 5.93137 6.22559 6.29406 6.57801 6.72943 7.01938 7.15575 7.29455 8.87693 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.005978 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.160303 B = 4682.662739 C = 6320.405673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.534 4.534 8 H 0.025 0.975 9 C -0.005 4.005 10 C -0.109 4.109 11 C 0.098 3.902 12 N -0.453 5.453 13 C -0.054 4.054 14 C -0.048 4.048 15 N -0.516 5.516 16 C 0.235 3.765 17 C -0.099 4.099 18 C -0.086 4.086 19 C -0.208 4.208 20 C 0.229 3.771 21 N -0.861 5.861 22 C -0.199 4.199 23 C -0.036 4.036 24 H 0.266 0.734 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.202 0.798 32 H 0.193 0.807 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.410 0.590 36 H 0.407 0.593 37 H 0.152 0.848 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.291 -4.421 -8.182 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.572 4.572 8 H 0.043 0.957 9 C -0.043 4.043 10 C -0.147 4.147 11 C -0.023 4.023 12 N -0.134 5.134 13 C -0.187 4.187 14 C -0.196 4.196 15 N -0.236 5.236 16 C -0.023 4.023 17 C -0.104 4.104 18 C -0.106 4.106 19 C -0.230 4.230 20 C 0.121 3.879 21 N -0.400 5.400 22 C -0.222 4.222 23 C -0.057 4.057 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.219 0.781 32 H 0.210 0.790 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.241 0.759 36 H 0.236 0.764 37 H 0.169 0.831 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.340 -4.784 -8.681 19.973 hybrid contribution -0.916 1.222 0.571 1.631 sum 16.425 -3.562 -8.110 18.661 Atomic orbital electron populations 1.70083 1.08566 1.28241 1.52455 1.26053 0.95580 1.03682 0.93923 0.85649 0.79746 0.77801 0.79435 1.18894 1.21384 1.16069 1.21397 0.92080 0.92901 1.50822 0.95710 1.19450 0.93950 0.93294 0.97634 1.21740 0.92705 0.98886 1.01385 1.22323 0.94865 0.79309 1.05808 1.45893 1.47962 1.13125 1.06442 1.23310 1.08469 0.91511 0.95422 1.22704 1.07446 0.99671 0.89823 1.70354 1.21612 1.15337 1.16257 1.21622 1.03841 0.89163 0.87717 1.17483 1.05045 0.99256 0.88581 1.21642 0.95929 0.94638 0.98367 1.20665 1.06301 1.04204 0.91860 1.17975 0.91995 0.91714 0.86247 1.42446 1.56433 1.35886 1.05217 1.20733 1.05031 0.98731 0.97676 1.20962 0.95944 0.97750 0.91029 0.92495 0.94832 0.95279 0.93339 0.92627 0.86646 0.87963 0.78070 0.79033 0.85036 0.85106 0.75930 0.76362 0.83052 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 2 C 0.00 0.25 5.47 84.66 0.46 0.71 16 3 Si 0.95 42.03 27.47 68.60 1.88 43.92 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 7 C -0.53 -30.00 9.66 25.60 0.25 -29.75 16 8 H 0.02 1.57 7.99 -2.91 -0.02 1.54 16 9 C -0.01 -0.23 4.02 29.85 0.12 -0.11 16 10 C -0.11 -4.06 4.57 30.60 0.14 -3.92 16 11 C 0.10 2.89 5.26 86.38 0.45 3.34 16 12 N -0.45 -14.09 2.79 -515.47 -1.44 -15.53 16 13 C -0.05 -1.46 11.58 83.10 0.96 -0.50 16 14 C -0.05 -1.38 11.84 83.59 0.99 -0.39 16 15 N -0.52 -17.74 11.01 -189.41 -2.09 -19.83 16 16 C 0.23 8.01 7.58 136.51 1.04 9.05 16 17 C -0.10 -3.17 5.85 -20.07 -0.12 -3.28 16 18 C -0.09 -2.69 8.39 22.50 0.19 -2.50 16 19 C -0.21 -5.65 9.87 22.36 0.22 -5.43 16 20 C 0.23 5.10 6.75 38.33 0.26 5.36 16 21 N -0.86 -12.49 9.08 -51.29 -0.47 -12.96 16 22 C -0.20 -4.38 9.87 22.36 0.22 -4.16 16 23 C -0.04 -0.99 9.68 22.49 0.22 -0.77 16 24 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 26 H 0.03 1.18 7.53 -2.39 -0.02 1.16 16 27 H 0.05 1.98 6.77 -2.39 -0.02 1.97 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.12 2.80 8.14 -2.38 -0.02 2.78 16 30 H 0.10 2.88 5.95 -2.39 -0.01 2.87 16 31 H 0.20 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.19 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.13 4.40 2.89 -2.91 -0.01 4.40 16 34 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.41 3.88 8.84 -92.71 -0.82 3.06 16 36 H 0.41 4.97 8.84 -92.71 -0.82 4.15 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.13 3.46 7.94 -2.91 -0.02 3.44 16 Total: -1.00 -72.53 316.23 3.00 -69.54 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.60 Total: 26.09 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 5.40 Total: -32.36 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -3.69 Total: -107.19 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.92 kcal Total: -72.53 3.00 -69.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.972 kcal (2) G-P(sol) polarization free energy of solvation -72.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds