Wall clock time and date at job start Mon Mar 30 2020 07:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47653 * 1.80476 * 3 2 1 5 5 H 1.09002 * 109.47153 * 54.99903 * 4 3 2 6 6 N 1.46500 * 109.47007 * 294.99991 * 4 3 2 7 7 C 1.34777 * 120.00075 * 84.99755 * 6 4 3 8 8 O 1.21287 * 119.99865 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00179 * 179.97438 * 7 6 4 10 10 H 1.08999 * 109.47169 * 300.00043 * 9 7 6 11 11 C 1.52995 * 109.46871 * 60.00370 * 9 7 6 12 12 C 1.50697 * 109.47104 * 180.02562 * 9 7 6 13 13 H 1.08000 * 120.00139 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00047 * 180.02562 * 12 9 7 15 15 N 1.31520 * 120.00135 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00148 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47265 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47212 * 119.99730 * 16 14 12 19 19 H 1.48507 * 109.46818 * 239.99856 * 16 14 12 20 20 C 1.50701 * 109.47212 * 174.99901 * 4 3 2 21 21 C 1.38238 * 119.99612 * 79.72655 * 20 4 3 22 22 C 1.38236 * 119.99607 * 179.81010 * 21 20 4 23 23 C 1.38235 * 120.00116 * 0.39532 * 22 21 20 24 24 C 1.38233 * 119.99985 * 359.86014 * 23 22 21 25 25 C 1.38223 * 120.00108 * 260.00042 * 20 4 3 26 26 H 4.44651 * 5.63313 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.46715 * 241.80151 * 3 2 1 28 28 H 1.09008 * 109.47023 * 121.80612 * 3 2 1 29 29 H 0.96997 * 120.00274 * 264.99726 * 6 4 3 30 30 H 1.09001 * 109.47252 * 299.99765 * 11 9 7 31 31 H 1.08999 * 109.47491 * 59.99870 * 11 9 7 32 32 H 1.09001 * 109.46855 * 180.02562 * 11 9 7 33 33 H 0.96998 * 120.00020 * 180.02562 * 15 14 12 34 34 H 1.08001 * 120.00192 * 359.97438 * 21 20 4 35 35 H 1.08000 * 120.00146 * 180.23159 * 22 21 20 36 36 H 1.08002 * 120.00422 * 179.83385 * 23 22 21 37 37 H 1.08000 * 120.00342 * 179.97438 * 24 23 22 38 38 H 1.07998 * 120.00341 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1568 -1.4408 -0.0454 5 1 2.7224 -1.9533 -0.9038 6 7 2.7696 -2.1351 1.1851 7 6 1.5526 -2.7059 1.2824 8 8 0.7781 -2.6453 0.3510 9 6 1.1544 -3.4206 2.5480 10 1 1.8462 -4.2420 2.7344 11 6 1.1979 -2.4407 3.7222 12 6 -0.2428 -3.9652 2.3991 13 1 -0.7881 -3.8091 1.4801 14 6 -0.8253 -4.6620 3.4365 15 7 -0.1614 -4.8517 4.5559 16 14 -2.5570 -5.3377 3.2517 17 1 -3.0824 -4.9917 1.9066 18 1 -2.5316 -6.8141 3.4089 19 1 -3.4337 -4.7439 4.2929 20 6 4.6587 -1.4379 -0.1693 21 6 5.4439 -1.2258 0.9485 22 6 6.8217 -1.2270 0.8356 23 6 7.4140 -1.4323 -0.3964 24 6 6.6287 -1.6392 -1.5151 25 6 5.2510 -1.6418 -1.4014 26 1 -1.0497 -0.0005 -0.0002 27 1 3.0091 0.4864 0.9057 28 1 3.0091 0.5425 -0.8734 29 1 3.3891 -2.1839 1.9299 30 1 2.2087 -2.0472 3.8298 31 1 0.5061 -1.6193 3.5358 32 1 0.9104 -2.9578 4.6377 33 1 -0.5711 -5.3422 5.2856 34 1 4.9811 -1.0617 1.9104 35 1 7.4353 -1.0650 1.7095 36 1 8.4904 -1.4306 -0.4852 37 1 7.0914 -1.7991 -2.4777 38 1 4.6375 -1.8035 -2.2754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831237247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:47 Heat of formation + Delta-G solvation = 35.872477 kcal Electronic energy + Delta-G solvation = -20253.669388 eV Core-core repulsion = 17255.374124 eV Total energy + Delta-G solvation = -2998.295264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88478 -38.44439 -35.49264 -33.65411 -32.71393 -31.40038 -30.93859 -30.05017 -28.47907 -25.09558 -24.35850 -22.91491 -22.30092 -20.65166 -19.24382 -17.81911 -17.08487 -16.25006 -15.81190 -15.58498 -15.08490 -14.57035 -14.38355 -14.31904 -13.79734 -13.47421 -13.16479 -13.03043 -12.71637 -12.55585 -12.32103 -11.78499 -11.42642 -11.18784 -11.00093 -10.95065 -10.65560 -10.62662 -10.22537 -9.96689 -9.86265 -9.62106 -9.01176 -8.91500 -8.89364 -8.49162 -8.28777 -8.20101 -5.99118 -4.01447 1.22982 1.30940 3.34117 3.39112 3.41577 3.44280 3.49783 3.68778 3.87566 4.02928 4.50966 4.59867 4.80841 4.90012 4.98778 5.09265 5.34217 5.38375 5.41038 5.50398 5.55047 5.75748 5.86526 5.90844 6.05045 6.31060 6.36200 6.41144 6.55394 6.57003 6.66515 6.88359 6.89472 6.98886 7.16987 7.53505 7.80369 8.04119 8.20811 8.29320 8.52196 9.08058 9.36265 9.64019 11.08672 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.004773 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.033876 B = 5865.042261 C = 6407.265168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.195 4.195 3 C -0.009 4.009 4 C 0.189 3.811 5 H 0.094 0.906 6 N -0.742 5.742 7 C 0.520 3.480 8 O -0.532 6.532 9 C 0.030 3.970 10 H 0.049 0.951 11 C -0.130 4.130 12 C -0.495 4.495 13 H 0.074 0.926 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.084 4.084 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.108 4.108 26 H 0.209 0.791 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.394 0.606 30 H 0.009 0.991 31 H 0.030 0.970 32 H 0.092 0.908 33 H 0.259 0.741 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.960 9.096 -7.475 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.195 4.195 3 C -0.047 4.047 4 C 0.084 3.916 5 H 0.112 0.888 6 N -0.397 5.397 7 C 0.309 3.691 8 O -0.406 6.406 9 C 0.009 3.991 10 H 0.067 0.933 11 C -0.188 4.188 12 C -0.533 4.533 13 H 0.093 0.907 14 C -0.143 4.143 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.127 4.127 26 H 0.226 0.774 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.229 0.771 30 H 0.028 0.972 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.332 9.032 -7.990 17.977 hybrid contribution -0.705 -0.445 0.426 0.936 sum 12.627 8.587 -7.563 17.041 Atomic orbital electron populations 1.24608 0.95700 0.99098 0.99945 1.22443 0.93939 1.01761 1.01395 1.19013 0.86107 0.96866 1.02721 1.19627 0.88898 0.92132 0.90980 0.88770 1.46420 1.18368 1.58627 1.16259 1.21879 0.79329 0.76735 0.91131 1.90551 1.50719 1.58663 1.40664 1.18851 0.98734 0.94047 0.87505 0.93311 1.21714 0.96399 0.98194 1.02494 1.21182 0.98261 1.32835 1.01046 0.90746 1.24950 0.98066 0.96141 0.95193 1.69886 1.37292 1.41910 1.04666 0.86430 0.84364 0.78449 0.78195 1.19607 1.21116 1.21132 1.20003 0.94886 0.99629 0.93910 1.21024 0.93738 0.99728 0.98403 1.21137 0.94705 1.00032 0.97646 1.21152 0.99732 1.00355 0.92957 1.21121 0.93666 1.00272 0.98675 1.21048 0.94920 0.99653 0.97046 0.77446 0.89959 0.89712 0.77137 0.97159 0.95075 0.88985 0.93124 0.85799 0.85974 0.86248 0.86074 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 17.92 29.55 0.53 -2.74 16 2 C -0.20 -3.52 11.17 -37.12 -0.41 -3.93 16 3 C -0.01 -0.13 5.36 -29.52 -0.16 -0.29 16 4 C 0.19 2.85 2.44 -69.08 -0.17 2.69 16 5 H 0.09 1.61 7.44 -51.93 -0.39 1.22 16 6 N -0.74 -13.04 4.88 -54.93 -0.27 -13.30 16 7 C 0.52 11.81 6.46 -10.99 -0.07 11.74 16 8 O -0.53 -13.50 12.32 5.55 0.07 -13.44 16 9 C 0.03 0.75 2.64 -92.93 -0.25 0.50 16 10 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 11 C -0.13 -3.03 8.87 37.15 0.33 -2.70 16 12 C -0.49 -14.11 8.38 -34.44 -0.29 -14.40 16 13 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 14 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 15 N -0.90 -25.46 11.32 55.43 0.63 -24.83 16 16 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.08 -1.04 4.95 -104.63 -0.52 -1.55 16 21 C -0.11 -1.25 9.05 -39.58 -0.36 -1.60 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 25 C -0.11 -1.21 9.67 -39.59 -0.38 -1.59 16 26 H 0.21 3.38 7.80 -54.10 -0.42 2.96 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.39 6.14 6.30 -40.82 -0.26 5.88 16 30 H 0.01 0.19 7.56 -51.93 -0.39 -0.21 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.12 1.30 6.93 -52.49 -0.36 0.94 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 1.24 8.04 -52.49 -0.42 0.82 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -32.22 323.67 -7.76 -39.97 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.01 Total: 6.77 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -3.03 Total: -17.05 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.36 Total: -38.14 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.07 Total: -13.44 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.22 -7.76 -39.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831237247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.846 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds