Wall clock time and date at job start Mon Mar 30 2020 07:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47085 * 83.00290 * 3 2 1 5 5 H 1.08999 * 109.47412 * 304.99672 * 4 3 2 6 6 N 1.46505 * 109.47092 * 65.00196 * 4 3 2 7 7 C 1.34772 * 119.99966 * 274.99783 * 6 4 3 8 8 O 1.21278 * 119.99945 * 359.97438 * 7 6 4 9 9 C 1.50694 * 120.00060 * 179.97438 * 7 6 4 10 10 H 1.09003 * 109.46868 * 60.00019 * 9 7 6 11 11 C 1.53000 * 109.47442 * 300.00034 * 9 7 6 12 12 C 1.50703 * 109.47440 * 180.02562 * 9 7 6 13 13 H 1.07999 * 119.99511 * 35.10221 * 12 9 7 14 14 C 1.37867 * 120.00004 * 215.10723 * 12 9 7 15 15 N 1.31521 * 119.99733 * 184.90633 * 14 12 9 16 16 Si 1.86804 * 120.00464 * 4.90887 * 14 12 9 17 17 H 1.48492 * 109.46998 * 84.82145 * 16 14 12 18 18 H 1.48497 * 109.47173 * 204.82512 * 16 14 12 19 19 H 1.48497 * 109.46668 * 324.81956 * 16 14 12 20 20 C 1.50705 * 109.47015 * 184.99807 * 4 3 2 21 21 C 1.38233 * 119.99790 * 100.00373 * 20 4 3 22 22 C 1.38234 * 120.00103 * 180.02562 * 21 20 4 23 23 C 1.38239 * 120.00044 * 359.95207 * 22 21 20 24 24 C 1.38239 * 119.99615 * 0.02562 * 23 22 21 25 25 C 1.38230 * 120.00328 * 279.98167 * 20 4 3 26 26 H 4.44642 * 5.63374 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47110 * 323.00527 * 3 2 1 28 28 H 1.09000 * 109.47331 * 203.00647 * 3 2 1 29 29 H 0.97005 * 119.99784 * 94.99843 * 6 4 3 30 30 H 1.09011 * 109.46721 * 55.07414 * 11 9 7 31 31 H 1.08998 * 109.47644 * 175.06595 * 11 9 7 32 32 H 1.09000 * 109.47080 * 295.07571 * 11 9 7 33 33 H 0.97005 * 119.99753 * 179.97438 * 15 14 12 34 34 H 1.08006 * 120.00413 * 359.97438 * 21 20 4 35 35 H 1.08002 * 120.00352 * 179.97438 * 22 21 20 36 36 H 1.07999 * 119.99972 * 179.72157 * 23 22 21 37 37 H 1.07996 * 119.99644 * 179.97438 * 24 23 22 38 38 H 1.08007 * 120.00093 * 0.02562 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1748 -1.4317 5 1 2.7219 -1.0762 -1.8642 6 7 2.7680 0.9878 -2.2343 7 6 1.5507 1.0325 -2.8111 8 8 0.7768 0.1101 -2.6660 9 6 1.1513 2.2285 -3.6361 10 1 1.8427 2.3410 -4.4713 11 6 1.1942 3.4860 -2.7656 12 6 -0.2465 2.0309 -4.1636 13 1 -0.9826 1.5172 -3.5631 14 6 -0.5854 2.5058 -5.4127 15 7 -1.8284 2.4196 -5.8340 16 14 0.7206 3.2716 -6.5070 17 1 1.4266 2.2024 -7.2575 18 1 0.0777 4.2069 -7.4647 19 1 1.6954 4.0144 -5.6685 20 6 4.6581 -0.2972 -1.4184 21 6 5.2508 -1.5427 -1.5103 22 6 6.6285 -1.6551 -1.4975 23 6 7.4135 -0.5219 -1.3939 24 6 6.8207 0.7236 -1.3025 25 6 5.4430 0.8358 -1.3148 26 1 -1.0499 0.0002 -0.0001 27 1 3.0097 -0.8200 0.6184 28 1 3.0089 0.9467 0.4016 29 1 3.3872 1.7253 -2.3506 30 1 2.1815 3.5813 -2.3134 31 1 0.9910 4.3618 -3.3819 32 1 0.4411 3.4108 -1.9813 33 1 -2.0670 2.7541 -6.7127 34 1 4.6376 -2.4280 -1.5912 35 1 7.0917 -2.6281 -1.5689 36 1 8.4898 -0.6101 -1.3795 37 1 7.4340 1.6088 -1.2212 38 1 4.9799 1.8089 -1.2430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831237249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:52 Heat of formation + Delta-G solvation = 38.152707 kcal Electronic energy + Delta-G solvation = -20305.428021 eV Core-core repulsion = 17307.231635 eV Total energy + Delta-G solvation = -2998.196386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95233 -38.53467 -35.55074 -33.59485 -32.74276 -31.59688 -31.07100 -30.59505 -28.57151 -25.21468 -24.45484 -22.96600 -22.30069 -20.63680 -19.24764 -17.81989 -17.12733 -16.99433 -15.83666 -15.75261 -15.09909 -14.70808 -14.41780 -14.17291 -13.87102 -13.53197 -13.24045 -13.03842 -12.89092 -12.60522 -12.40977 -12.07180 -11.84146 -11.30911 -11.22504 -11.06746 -11.00434 -10.72865 -10.25695 -9.93758 -9.78660 -9.65640 -9.12681 -9.06200 -8.95089 -8.59659 -8.44486 -8.30562 -6.03557 -4.01926 1.17939 1.25967 3.26407 3.32941 3.34973 3.36393 3.41363 3.62842 3.77444 3.93635 4.41167 4.54844 4.75474 4.85209 4.94538 5.05467 5.27153 5.33356 5.36361 5.45128 5.50059 5.71326 5.81422 5.85807 5.95531 6.12776 6.18979 6.30484 6.36089 6.41560 6.49897 6.54777 6.58084 6.84281 6.87381 7.08269 7.22287 7.60097 8.21959 8.26870 8.59249 9.12591 9.27400 9.56996 11.09848 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.005540 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.384828 B = 5053.248190 C = 5900.822518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.199 4.199 3 C -0.008 4.008 4 C 0.189 3.811 5 H 0.096 0.904 6 N -0.744 5.744 7 C 0.519 3.481 8 O -0.515 6.515 9 C -0.004 4.004 10 H 0.051 0.949 11 C -0.132 4.132 12 C -0.490 4.490 13 H 0.086 0.914 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.870 3.130 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.084 4.084 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.112 4.112 26 H 0.210 0.790 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.392 0.608 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.264 0.736 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.133 -3.519 10.903 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.199 4.199 3 C -0.046 4.046 4 C 0.083 3.917 5 H 0.114 0.886 6 N -0.400 5.400 7 C 0.307 3.693 8 O -0.387 6.387 9 C -0.026 4.026 10 H 0.069 0.931 11 C -0.190 4.190 12 C -0.528 4.528 13 H 0.104 0.896 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.697 3.303 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.085 4.085 21 C -0.126 4.126 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.130 4.130 26 H 0.227 0.773 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.227 0.773 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.382 -4.162 10.825 20.896 hybrid contribution 0.804 0.798 -0.847 1.415 sum 18.187 -3.364 9.978 21.015 Atomic orbital electron populations 1.24668 0.95746 0.99743 0.98854 1.22432 0.93925 1.01582 1.01985 1.18995 0.86122 1.02714 0.96765 1.19650 0.88905 0.92284 0.90813 0.88617 1.46475 1.18300 1.20965 1.54240 1.21660 0.79571 0.89768 0.78301 1.90600 1.50575 1.38336 1.59192 1.19333 0.99420 0.89650 0.94198 0.93081 1.21931 0.98425 0.98799 0.99825 1.20733 0.93481 1.36577 1.01992 0.89618 1.25019 0.95131 0.95458 0.97448 1.69888 1.17059 1.46969 1.19535 0.86981 0.82518 0.79706 0.81061 1.20199 1.21318 1.19000 1.20004 0.94871 0.93755 0.99832 1.21063 0.94929 0.97003 0.99593 1.21132 0.93672 0.98640 1.00216 1.21159 0.99755 0.92771 1.00490 1.21129 0.94688 0.97617 1.00128 1.21000 0.93738 0.98290 0.99983 0.77349 0.89659 0.89997 0.77340 0.95705 0.92876 0.92967 0.92633 0.85733 0.86028 0.86231 0.86009 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 17.92 29.55 0.53 -2.64 16 2 C -0.20 -3.50 11.17 -37.12 -0.41 -3.91 16 3 C -0.01 -0.11 5.37 -29.52 -0.16 -0.27 16 4 C 0.19 2.75 2.44 -69.08 -0.17 2.58 16 5 H 0.10 1.60 7.44 -51.93 -0.39 1.21 16 6 N -0.74 -12.42 4.85 -54.93 -0.27 -12.69 16 7 C 0.52 11.40 6.46 -10.99 -0.07 11.33 16 8 O -0.51 -13.06 12.62 5.56 0.07 -12.99 16 9 C 0.00 -0.10 2.30 -92.93 -0.21 -0.31 16 10 H 0.05 1.18 5.29 -51.93 -0.27 0.90 16 11 C -0.13 -2.67 9.12 37.16 0.34 -2.33 16 12 C -0.49 -14.09 8.36 -34.44 -0.29 -14.38 16 13 H 0.09 2.80 7.61 -52.49 -0.40 2.40 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 16 Si 0.87 21.21 26.99 -169.99 -4.59 16.62 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.27 -5.97 6.82 56.52 0.39 -5.58 16 20 C -0.08 -1.00 4.95 -104.62 -0.52 -1.52 16 21 C -0.11 -1.16 9.67 -39.59 -0.38 -1.54 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.11 -1.18 9.05 -39.59 -0.36 -1.54 16 26 H 0.21 3.40 7.80 -54.09 -0.42 2.98 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.39 5.58 6.23 -40.82 -0.25 5.33 16 30 H 0.02 0.40 7.43 -51.92 -0.39 0.01 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 34 H 0.12 1.22 8.04 -52.48 -0.42 0.80 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.17 6.92 -52.48 -0.36 0.81 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -34.06 323.68 -7.15 -41.21 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.02 Total: 7.05 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -3.00 Total: -17.07 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.51 Total: -39.70 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.59 Total: 16.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.06 -7.15 -41.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831237249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.362 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds