Wall clock time and date at job start Mon Mar 30 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46752 * 2 1 4 4 C 1.52998 * 109.47424 * 120.00110 * 2 1 3 5 5 C 1.50700 * 109.46945 * 295.00133 * 4 2 1 6 6 H 1.08000 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99728 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00013 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46859 * 60.00268 * 9 7 5 11 11 H 1.48495 * 109.47113 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47419 * 300.00607 * 9 7 5 13 13 N 1.46503 * 109.47028 * 240.00464 * 2 1 3 14 14 C 1.34902 * 125.90102 * 325.28087 * 13 2 1 15 15 C 1.36407 * 107.60269 * 180.16712 * 14 13 2 16 16 C 1.48506 * 126.21434 * 179.83986 * 15 14 13 17 17 C 1.39328 * 120.04093 * 179.70889 * 16 15 14 18 18 C 1.37908 * 119.95704 * 180.02562 * 17 16 15 19 19 C 1.38975 * 120.04481 * 0.02562 * 18 17 16 20 20 N 1.39702 * 119.96013 * 179.69687 * 19 18 17 21 21 C 1.38971 * 120.08111 * 359.97438 * 19 18 17 22 22 C 1.37920 * 120.04358 * 359.97438 * 21 19 18 23 23 C 1.40825 * 107.56649 * 359.57168 * 15 14 13 24 24 N 1.30681 * 108.11382 * 0.26866 * 23 15 14 25 25 H 1.09001 * 109.46752 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47225 * 299.99750 * 1 2 3 27 27 H 1.08995 * 109.47467 * 60.00013 * 1 2 3 28 28 H 1.08995 * 109.46984 * 54.99837 * 4 2 1 29 29 H 1.08999 * 109.47382 * 175.00085 * 4 2 1 30 30 H 0.97008 * 120.00052 * 179.97438 * 8 7 5 31 31 H 1.08003 * 126.19876 * 0.02562 * 14 13 2 32 32 H 1.08001 * 120.01876 * 0.04823 * 17 16 15 33 33 H 1.08002 * 119.98111 * 180.02562 * 18 17 16 34 34 H 0.97000 * 119.99819 * 0.02562 * 20 19 18 35 35 H 0.97001 * 120.00198 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.97436 * 179.97438 * 21 19 18 37 37 H 1.07998 * 120.01939 * 180.02562 * 22 21 19 38 38 H 1.08000 * 125.94250 * 180.28414 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4023 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4989 0.5628 5.2496 10 1 0.0190 0.6703 5.3090 11 1 1.9928 -0.1379 6.4621 12 1 2.0919 1.9228 5.1871 13 7 2.0183 -0.6905 -1.1963 14 6 1.4352 -1.7521 -1.7903 15 6 2.2008 -2.0949 -2.8660 16 6 1.9383 -3.2111 -3.8097 17 6 2.8068 -3.4435 -4.8740 18 6 2.5611 -4.4802 -5.7496 19 6 1.4477 -5.2926 -5.5713 20 7 1.1970 -6.3383 -6.4630 21 6 0.5802 -5.0623 -4.5103 22 6 0.8232 -4.0272 -3.6318 23 6 3.2819 -1.1943 -2.9225 24 7 3.1676 -0.3591 -1.9240 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6055 -1.7198 1.2951 29 1 3.1264 -0.7994 1.2055 30 1 2.9230 -1.8423 4.7317 31 1 0.5279 -2.2431 -1.4707 32 1 3.6722 -2.8124 -5.0129 33 1 3.2343 -4.6610 -6.5746 34 1 1.8001 -6.4973 -7.2059 35 1 0.4203 -6.9059 -6.3389 36 1 -0.2848 -5.6945 -4.3735 37 1 0.1490 -3.8488 -2.8072 38 1 4.0685 -1.1938 -3.6626 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:52 Heat of formation + Delta-G solvation = 85.292322 kcal Electronic energy + Delta-G solvation = -19458.517619 eV Core-core repulsion = 16494.658112 eV Total energy + Delta-G solvation = -2963.859508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78464 -38.99508 -35.52653 -34.49687 -32.52121 -30.91625 -30.43589 -29.61506 -27.11257 -27.05170 -24.03910 -22.92574 -22.28599 -21.23774 -19.89282 -19.12536 -17.33996 -16.75630 -16.63685 -16.06386 -15.09058 -14.79880 -14.21377 -14.02932 -13.97136 -13.60270 -13.26340 -13.21857 -13.09893 -12.41598 -12.38094 -12.01745 -11.72731 -11.54859 -11.04828 -10.92976 -10.88260 -10.78904 -10.58045 -10.26891 -10.02824 -9.88457 -9.34297 -8.84516 -8.82407 -8.47826 -8.39772 -6.89048 -6.11735 -4.16886 1.50956 1.56285 2.54127 3.10737 3.26948 3.28134 3.32390 3.34422 3.81992 4.24719 4.36841 4.88928 5.02674 5.07715 5.23901 5.26114 5.44779 5.54805 5.56476 5.62212 5.73175 5.87800 5.93366 6.05567 6.16048 6.24374 6.40059 6.43629 6.54211 6.60310 6.65615 6.94812 6.96035 7.11508 7.42191 7.48424 7.50988 7.63285 7.67278 7.86825 8.19615 8.27307 8.87627 9.47657 10.99355 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.032513 B = 0.003423 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.979900 B = 8178.929622 C = 8452.989238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.151 3.849 3 H 0.093 0.907 4 C 0.020 3.980 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.339 5.339 14 C 0.073 3.927 15 C -0.215 4.215 16 C -0.031 4.031 17 C -0.076 4.076 18 C -0.190 4.190 19 C 0.194 3.806 20 N -0.885 5.885 21 C -0.189 4.189 22 C -0.078 4.078 23 C 0.044 3.956 24 N -0.296 5.296 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.168 0.832 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.394 0.606 35 H 0.394 0.606 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -6.679 -18.309 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 H 0.111 0.889 4 C -0.018 4.018 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.118 5.118 14 C -0.077 4.077 15 C -0.227 4.227 16 C -0.034 4.034 17 C -0.095 4.095 18 C -0.212 4.212 19 C 0.091 3.909 20 N -0.425 5.425 21 C -0.211 4.211 22 C -0.097 4.097 23 C -0.142 4.142 24 N -0.117 5.117 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.185 0.815 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.222 0.778 35 H 0.222 0.778 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.667 -5.630 -17.381 18.635 hybrid contribution -0.590 -0.679 0.292 0.946 sum -4.257 -6.309 -17.089 18.707 Atomic orbital electron populations 1.22081 0.93768 1.02478 1.02376 1.21878 0.94106 0.97248 0.81636 0.88939 1.19483 0.97401 0.95828 0.89057 1.20982 1.36249 1.08712 0.90384 0.92156 1.25001 0.94875 0.95022 0.99227 1.69963 1.37906 1.20926 1.23959 0.86586 0.78906 0.80081 0.82038 1.20093 1.21200 1.20080 1.49246 1.17652 1.23026 1.21922 1.22407 0.99430 0.91592 0.94241 1.18714 1.00221 1.02686 1.01061 1.17887 0.95537 0.95020 0.94974 1.20810 0.98509 0.96606 0.93570 1.20433 0.98937 0.99037 1.02823 1.17759 0.94035 0.88806 0.90316 1.42408 1.32439 1.35364 1.32256 1.20445 1.01334 1.01942 0.97398 1.20867 0.96588 0.94078 0.98208 1.23726 0.98792 0.94181 0.97504 1.77222 1.03533 1.24030 1.06915 0.92394 0.89130 0.93629 0.95913 0.95621 0.92671 0.81476 0.86164 0.86637 0.77827 0.77797 0.86595 0.86259 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.64 37.16 0.32 -2.23 16 2 C 0.15 3.10 3.34 -67.93 -0.23 2.88 16 3 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 4 C 0.02 0.51 4.77 -27.88 -0.13 0.38 16 5 C -0.52 -14.04 8.41 -34.44 -0.29 -14.33 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.34 -6.71 3.52 -54.59 -0.19 -6.90 16 14 C 0.07 1.27 9.97 -16.86 -0.17 1.10 16 15 C -0.22 -3.53 6.04 -105.35 -0.64 -4.16 16 16 C -0.03 -0.44 5.88 -104.86 -0.62 -1.06 16 17 C -0.08 -0.95 9.57 -39.30 -0.38 -1.33 16 18 C -0.19 -2.11 9.88 -39.43 -0.39 -2.50 16 19 C 0.19 2.10 6.76 -83.73 -0.57 1.54 16 20 N -0.88 -6.62 9.09 32.44 0.29 -6.33 16 21 C -0.19 -2.17 9.88 -39.43 -0.39 -2.56 16 22 C -0.08 -1.02 9.56 -39.30 -0.38 -1.40 16 23 C 0.04 0.74 11.41 -17.06 -0.19 0.54 16 24 N -0.30 -5.94 12.54 30.80 0.39 -5.56 16 25 H 0.06 0.94 7.14 -51.93 -0.37 0.57 16 26 H 0.09 1.59 6.95 -51.93 -0.36 1.23 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.17 2.48 6.46 -52.48 -0.34 2.14 16 32 H 0.12 1.31 7.04 -52.49 -0.37 0.94 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.39 2.24 8.84 -40.82 -0.36 1.88 16 35 H 0.39 2.30 8.84 -40.82 -0.36 1.94 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.12 1.42 7.01 -52.49 -0.37 1.06 16 38 H 0.18 2.29 7.34 -52.49 -0.39 1.90 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -31.71 322.52 -8.03 -39.74 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.96 Total: 5.29 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -4.14 Total: -21.54 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 1.23 Total: -44.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.71 -8.03 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.034 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds