Wall clock time and date at job start Mon Mar 30 2020 07:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46752 * 2 1 4 4 C 1.52998 * 109.47424 * 120.00110 * 2 1 3 5 5 C 1.50700 * 109.46945 * 295.00133 * 4 2 1 6 6 H 1.08000 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99728 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00013 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46859 * 60.00268 * 9 7 5 11 11 H 1.48495 * 109.47113 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47419 * 300.00607 * 9 7 5 13 13 N 1.46503 * 109.47028 * 240.00464 * 2 1 3 14 14 C 1.34902 * 125.90102 * 325.28087 * 13 2 1 15 15 C 1.36407 * 107.60269 * 180.16712 * 14 13 2 16 16 C 1.48506 * 126.21434 * 179.83986 * 15 14 13 17 17 C 1.39328 * 120.04093 * 179.70889 * 16 15 14 18 18 C 1.37908 * 119.95704 * 180.02562 * 17 16 15 19 19 C 1.38975 * 120.04481 * 0.02562 * 18 17 16 20 20 N 1.39702 * 119.96013 * 179.69687 * 19 18 17 21 21 C 1.38971 * 120.08111 * 359.97438 * 19 18 17 22 22 C 1.37920 * 120.04358 * 359.97438 * 21 19 18 23 23 C 1.40825 * 107.56649 * 359.57168 * 15 14 13 24 24 N 1.30681 * 108.11382 * 0.26866 * 23 15 14 25 25 H 1.09001 * 109.46752 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47225 * 299.99750 * 1 2 3 27 27 H 1.08995 * 109.47467 * 60.00013 * 1 2 3 28 28 H 1.08995 * 109.46984 * 54.99837 * 4 2 1 29 29 H 1.08999 * 109.47382 * 175.00085 * 4 2 1 30 30 H 0.97008 * 120.00052 * 179.97438 * 8 7 5 31 31 H 1.08003 * 126.19876 * 0.02562 * 14 13 2 32 32 H 1.08001 * 120.01876 * 0.04823 * 17 16 15 33 33 H 1.08002 * 119.98111 * 180.02562 * 18 17 16 34 34 H 0.97000 * 119.99819 * 0.02562 * 20 19 18 35 35 H 0.97001 * 120.00198 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.97436 * 179.97438 * 21 19 18 37 37 H 1.07998 * 120.01939 * 180.02562 * 22 21 19 38 38 H 1.08000 * 125.94250 * 180.28414 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4023 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4989 0.5628 5.2496 10 1 0.0190 0.6703 5.3090 11 1 1.9928 -0.1379 6.4621 12 1 2.0919 1.9228 5.1871 13 7 2.0183 -0.6905 -1.1963 14 6 1.4352 -1.7521 -1.7903 15 6 2.2008 -2.0949 -2.8660 16 6 1.9383 -3.2111 -3.8097 17 6 2.8068 -3.4435 -4.8740 18 6 2.5611 -4.4802 -5.7496 19 6 1.4477 -5.2926 -5.5713 20 7 1.1970 -6.3383 -6.4630 21 6 0.5802 -5.0623 -4.5103 22 6 0.8232 -4.0272 -3.6318 23 6 3.2819 -1.1943 -2.9225 24 7 3.1676 -0.3591 -1.9240 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6055 -1.7198 1.2951 29 1 3.1264 -0.7994 1.2055 30 1 2.9230 -1.8423 4.7317 31 1 0.5279 -2.2431 -1.4707 32 1 3.6722 -2.8124 -5.0129 33 1 3.2343 -4.6610 -6.5746 34 1 1.8001 -6.4973 -7.2059 35 1 0.4203 -6.9059 -6.3389 36 1 -0.2848 -5.6945 -4.3735 37 1 0.1490 -3.8488 -2.8072 38 1 4.0685 -1.1938 -3.6626 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:51 Heat of formation + Delta-G solvation = 65.838741 kcal Electronic energy + Delta-G solvation = -19459.361190 eV Core-core repulsion = 16494.658112 eV Total energy + Delta-G solvation = -2964.703078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.13389 -39.90950 -37.13253 -35.46145 -34.46922 -31.89911 -31.53380 -31.12455 -28.90099 -28.13751 -25.76972 -24.11249 -23.41668 -22.59893 -21.11107 -20.57079 -18.77045 -18.18160 -17.43266 -17.34701 -16.70897 -16.20150 -15.78015 -15.46073 -15.03416 -14.83972 -14.44537 -14.27881 -14.10480 -14.01512 -13.72856 -13.61707 -13.10682 -12.92253 -12.79857 -12.63300 -12.39588 -11.98388 -11.89547 -11.71561 -11.52129 -11.45082 -11.36580 -10.61250 -10.29877 -9.73536 -9.56311 -8.24268 -7.87919 -6.36875 0.48119 0.66366 1.18762 1.41299 1.44664 1.52155 1.69184 2.10461 2.40396 3.10448 3.15499 3.25784 3.66315 3.92013 4.06147 4.19478 4.20712 4.24965 4.37111 4.41340 4.58244 4.65455 4.80643 4.88417 4.98423 5.01853 5.08015 5.22390 5.28905 5.34820 5.44262 5.53075 5.56819 5.68717 5.86334 5.98256 6.04102 6.09193 6.27944 6.72839 6.77513 6.88822 7.12390 7.33047 8.88291 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.032513 B = 0.003423 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.979900 B = 8178.929622 C = 8452.989238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.162 3.838 3 H 0.083 0.917 4 C 0.033 3.967 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.360 5.360 14 C 0.058 3.942 15 C -0.206 4.206 16 C -0.065 4.065 17 C -0.078 4.078 18 C -0.197 4.197 19 C 0.200 3.800 20 N -0.871 5.871 21 C -0.200 4.200 22 C -0.086 4.086 23 C 0.046 3.954 24 N -0.340 5.340 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.070 0.930 28 H -0.001 1.001 29 H -0.022 1.022 30 H 0.264 0.736 31 H 0.186 0.814 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.406 0.594 35 H 0.405 0.595 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 -7.159 -19.907 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.061 3.939 3 H 0.101 0.899 4 C -0.005 4.005 5 C -0.573 4.573 6 H 0.094 0.906 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.140 5.140 14 C -0.090 4.090 15 C -0.218 4.218 16 C -0.068 4.068 17 C -0.097 4.097 18 C -0.220 4.220 19 C 0.094 3.906 20 N -0.411 5.411 21 C -0.223 4.223 22 C -0.105 4.105 23 C -0.139 4.139 24 N -0.161 5.161 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.017 0.983 29 H -0.004 1.004 30 H 0.073 0.927 31 H 0.203 0.797 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.234 0.766 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.929 -6.138 -19.031 20.594 hybrid contribution -0.158 -0.706 0.584 0.930 sum -5.086 -6.844 -18.446 20.322 Atomic orbital electron populations 1.21987 0.90881 1.03326 1.03411 1.21522 0.96192 0.95862 0.80308 0.89891 1.19250 0.94203 0.95268 0.91807 1.21433 1.35783 1.09116 0.90975 0.90604 1.26007 0.94755 0.95956 1.02939 1.70123 1.39552 1.22980 1.24718 0.85430 0.79324 0.78472 0.77426 1.18340 1.21300 1.19264 1.49073 1.18386 1.24325 1.22229 1.22827 1.00367 0.91237 0.94601 1.19022 0.99321 1.02667 1.00742 1.17919 0.97323 0.95571 0.95995 1.21023 0.98467 0.97096 0.93113 1.20703 0.99492 0.98579 1.03220 1.17938 0.93450 0.88982 0.90188 1.42412 1.32856 1.34191 1.31644 1.20666 1.02280 1.01892 0.97413 1.21019 0.96360 0.94392 0.98717 1.24322 0.99401 0.93205 0.96999 1.77150 1.04445 1.26080 1.08446 0.91664 0.89416 0.91085 0.98264 1.00408 0.92714 0.79673 0.84956 0.84280 0.76497 0.76602 0.84727 0.85976 0.77580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.64 71.98 0.62 -4.03 16 2 C 0.16 6.84 3.34 44.99 0.15 7.00 16 3 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 4 C 0.03 1.74 4.77 29.85 0.14 1.88 16 5 C -0.53 -29.19 8.41 25.60 0.22 -28.97 16 6 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 9 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 N -0.36 -14.65 3.52 -326.62 -1.15 -15.80 16 14 C 0.06 2.02 9.97 83.79 0.84 2.86 16 15 C -0.21 -6.74 6.04 -20.33 -0.12 -6.86 16 16 C -0.06 -1.80 5.88 -20.02 -0.12 -1.91 16 17 C -0.08 -1.82 9.57 22.45 0.21 -1.61 16 18 C -0.20 -3.87 9.88 22.37 0.22 -3.65 16 19 C 0.20 3.78 6.76 38.24 0.26 4.03 16 20 N -0.87 -10.12 9.09 -51.28 -0.47 -10.59 16 21 C -0.20 -4.19 9.88 22.37 0.22 -3.96 16 22 C -0.09 -2.15 9.56 22.45 0.21 -1.93 16 23 C 0.05 1.55 11.41 85.50 0.98 2.53 16 24 N -0.34 -14.02 12.54 -56.47 -0.71 -14.73 16 25 H 0.06 2.08 7.14 -2.39 -0.02 2.06 16 26 H 0.09 3.00 6.95 -2.38 -0.02 2.98 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 30 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 31 H 0.19 5.52 6.46 -2.91 -0.02 5.50 16 32 H 0.13 2.63 7.04 -2.91 -0.02 2.61 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.41 3.16 8.84 -92.71 -0.82 2.34 16 35 H 0.40 3.36 8.84 -92.71 -0.82 2.54 16 36 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.12 2.85 7.01 -2.91 -0.02 2.83 16 38 H 0.21 5.19 7.34 -2.91 -0.02 5.17 16 Total: -1.00 -70.74 322.52 3.73 -67.01 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.55 Total: 19.62 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 4.29 Total: -34.08 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -2.04 Total: -97.72 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.74 3.73 -67.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.851 kcal (2) G-P(sol) polarization free energy of solvation -70.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds