Wall clock time and date at job start Mon Mar 30 2020 07:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48504 * 109.46965 * 270.00034 * 3 2 1 5 5 H 1.48502 * 109.46979 * 30.00158 * 3 2 1 6 6 H 1.48499 * 109.47164 * 150.00050 * 3 2 1 7 7 C 1.37881 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99876 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47014 * 180.02562 * 9 7 2 11 11 C 1.52990 * 109.47291 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47429 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47355 * 179.97438 * 12 11 10 14 14 C 1.46900 * 111.00243 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47334 * 180.02562 * 14 13 12 16 16 H 1.08992 * 108.69252 * 56.79349 * 15 14 13 17 17 C 1.44526 * 108.72700 * 175.00293 * 15 14 13 18 18 C 1.53856 * 113.23441 * 186.62488 * 17 15 14 19 19 C 1.50760 * 108.58005 * 273.58910 * 18 17 15 20 20 S 1.82408 * 111.08632 * 95.90555 * 19 18 17 21 21 C 1.82401 * 105.00636 * 319.18099 * 20 19 18 22 22 C 1.50760 * 111.08365 * 319.17458 * 21 20 19 23 23 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47087 * 60.00413 * 9 7 2 25 25 H 1.09005 * 109.47290 * 300.00207 * 9 7 2 26 26 H 1.09000 * 109.46863 * 59.99678 * 10 9 7 27 27 H 1.09005 * 109.46976 * 300.00050 * 10 9 7 28 28 H 1.09004 * 109.47623 * 59.99384 * 11 10 9 29 29 H 1.09005 * 109.46888 * 299.99781 * 11 10 9 30 30 H 1.09003 * 109.46939 * 60.00058 * 12 11 10 31 31 H 1.08996 * 109.47083 * 300.00003 * 12 11 10 32 32 H 1.00901 * 111.00313 * 56.04310 * 13 12 11 33 33 H 1.09005 * 109.46872 * 60.00174 * 14 13 12 34 34 H 1.08999 * 109.47176 * 300.00484 * 14 13 12 35 35 H 1.08998 * 108.73659 * 65.65477 * 17 15 14 36 36 H 1.09003 * 108.63428 * 307.52225 * 17 15 14 37 37 H 1.08998 * 109.61877 * 33.31401 * 18 17 15 38 38 H 1.09004 * 109.62440 * 153.86200 * 18 17 15 39 39 H 1.09004 * 109.15676 * 216.31988 * 19 18 17 40 40 H 1.08993 * 109.15435 * 335.49487 * 19 18 17 41 41 H 1.09005 * 109.15052 * 198.76215 * 21 20 19 42 42 H 1.08996 * 109.15621 * 79.59179 * 21 20 19 43 43 H 1.09002 * 109.62064 * 336.19104 * 22 21 20 44 44 H 1.09001 * 109.77179 * 215.73360 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7400 -7.4222 -0.0018 14 6 2.6644 -8.5638 -0.0031 15 6 1.8643 -9.8680 -0.0037 16 1 1.1993 -9.8694 -0.8672 17 6 2.7839 -10.9765 -0.1241 18 6 2.0795 -12.3332 -0.2981 19 6 1.7595 -12.8869 1.0672 20 16 0.0477 -12.4859 1.5533 21 6 -0.2081 -10.7652 1.0051 22 6 1.0122 -9.9225 1.2762 23 1 -0.4849 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8719 -3.6043 0.8894 27 1 2.8719 -3.6044 -0.8906 28 1 0.8538 -5.0446 -0.8913 29 1 0.8534 -5.0451 0.8886 30 1 3.1012 -6.0927 0.8882 31 1 3.1011 -6.0918 -0.8918 32 1 1.1032 -7.4721 -0.7829 33 1 3.2931 -8.5232 0.8865 34 1 3.2918 -8.5224 -0.8934 35 1 3.4036 -11.0162 0.7717 36 1 3.4273 -10.8031 -0.9866 37 1 1.1574 -12.1971 -0.8631 38 1 2.7378 -13.0223 -0.8273 39 1 1.8826 -13.9699 1.0519 40 1 2.4477 -12.4599 1.7966 41 1 -1.0601 -10.3430 1.5381 42 1 -0.4174 -10.7580 -0.0646 43 1 1.5929 -10.3683 2.0838 44 1 0.7089 -8.9140 1.5572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700668708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:07 Heat of formation + Delta-G solvation = -56.174413 kcal Electronic energy + Delta-G solvation = -18410.362217 eV Core-core repulsion = 15679.352546 eV Total energy + Delta-G solvation = -2731.009671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.167 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87156 -37.51386 -35.78539 -34.23282 -33.35175 -31.48248 -29.68895 -27.01185 -25.65691 -24.04185 -22.98538 -22.38213 -21.77541 -21.14315 -18.44216 -17.71813 -17.04073 -16.54409 -16.28126 -16.07952 -15.78624 -15.62657 -14.98094 -14.62065 -14.46588 -14.22619 -14.09140 -13.74049 -13.49210 -13.23679 -13.15562 -12.91759 -12.82561 -12.62173 -12.32561 -12.18806 -12.10191 -11.78042 -11.62468 -11.51075 -11.40099 -11.32158 -11.26493 -10.92340 -10.55883 -10.51487 -9.33050 -8.66734 -8.20427 -6.31941 0.81092 1.39084 1.40834 1.52024 1.67405 2.40435 3.12243 3.16952 3.56925 3.74821 3.93081 4.06843 4.11292 4.16556 4.20881 4.27974 4.42114 4.55132 4.55315 4.65099 4.70697 4.74075 4.74528 4.83713 4.88656 4.91487 4.95046 4.95857 5.07895 5.20244 5.23879 5.25337 5.27785 5.36399 5.45932 5.48105 5.55132 5.77919 5.86678 6.10538 6.25493 6.48366 6.85819 7.37406 8.91460 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.048465 B = 0.002349 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.594945 B =11917.003681 C =12315.654395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.072 3.928 13 N -0.693 5.693 14 C 0.064 3.936 15 C -0.078 4.078 16 H 0.070 0.930 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.063 4.063 20 S -0.339 6.339 21 C -0.059 4.059 22 C -0.108 4.108 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.343 0.657 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.821 -27.236 -0.744 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.057 4.057 13 N -0.324 5.324 14 C -0.066 4.066 15 C -0.097 4.097 16 H 0.088 0.912 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.211 4.211 20 S -0.114 6.114 21 C -0.207 4.207 22 C -0.147 4.147 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.888 -27.790 0.456 28.220 hybrid contribution 1.028 1.918 -1.381 2.577 sum 5.916 -25.872 -0.925 26.556 Atomic orbital electron populations 1.70107 1.07855 1.27773 1.51763 1.26035 0.95816 1.03513 0.94761 0.85429 0.78651 0.78311 0.78547 1.19665 1.20698 1.18702 1.21750 0.93560 0.92551 1.50419 0.92210 1.19026 0.94524 0.93324 0.94585 1.21398 0.97965 0.93801 1.00371 1.21455 0.98053 0.93345 1.01444 1.21815 0.95201 0.88328 1.00370 1.60444 1.20207 1.01421 1.50309 1.22107 0.94122 0.89709 1.00620 1.19833 0.97508 0.94147 0.98190 0.91195 1.20308 0.98376 0.93656 1.03212 1.21587 1.01673 0.96972 0.95274 1.23288 0.92620 1.04885 1.00314 1.87092 1.22314 1.20390 1.81622 1.23209 1.01901 0.91218 1.04378 1.21579 0.94659 1.00944 0.97515 0.92768 0.99224 0.99300 0.93180 0.93173 0.92860 0.92677 0.91318 0.95065 0.83873 0.91328 0.94828 0.91444 0.90825 0.91390 0.88784 0.87347 0.89495 0.88497 0.89486 0.91733 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -4.00 5.15 30.59 0.16 -3.85 16 11 C -0.10 -3.49 5.47 30.59 0.17 -3.32 16 12 C 0.07 1.85 5.69 86.30 0.49 2.34 16 13 N -0.69 -14.72 5.47 -513.89 -2.81 -17.53 16 14 C 0.06 1.06 4.95 86.30 0.43 1.49 16 15 C -0.08 -1.06 1.78 -13.06 -0.02 -1.09 16 16 H 0.07 0.97 7.22 -2.39 -0.02 0.95 16 17 C -0.12 -1.27 4.36 28.32 0.12 -1.14 16 18 C -0.12 -1.17 5.59 30.16 0.17 -1.00 16 19 C -0.06 -0.77 5.76 71.25 0.41 -0.35 16 20 S -0.34 -6.08 21.98 -56.49 -1.24 -7.32 16 21 C -0.06 -0.96 5.76 71.25 0.41 -0.55 16 22 C -0.11 -1.73 4.97 30.15 0.15 -1.58 16 23 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.98 16 28 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.34 6.86 8.73 -89.69 -0.78 6.08 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.03 0.54 7.99 -2.39 -0.02 0.52 16 35 H 0.07 0.73 7.22 -2.39 -0.02 0.71 16 36 H 0.07 0.72 7.92 -2.39 -0.02 0.70 16 37 H 0.07 0.82 6.96 -2.39 -0.02 0.80 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.02 6.85 -2.39 -0.02 1.00 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 1.31 6.85 -2.39 -0.02 1.29 16 43 H 0.06 1.08 6.96 -2.39 -0.02 1.07 16 44 H 0.09 1.70 7.04 -2.39 -0.02 1.68 16 Total: -1.00 -64.72 348.13 1.74 -62.98 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.16 Total: 11.67 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 3.33 Total: -38.91 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -2.53 Total: -75.21 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -6.08 SS G_CDS: -1.24 Total: -7.32 kcal Total: -64.72 1.74 -62.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700668708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.810 kcal (2) G-P(sol) polarization free energy of solvation -64.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds