Wall clock time and date at job start Mon Mar 30 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 120.01072 * 2 1 4 4 C 1.38220 * 120.04584 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.06023 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99338 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 99.99950 * 6 5 4 8 8 H 1.08000 * 120.00563 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99902 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99792 * 179.72330 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47088 * 89.99795 * 11 9 7 13 13 H 1.48495 * 109.47293 * 209.99997 * 11 9 7 14 14 H 1.48507 * 109.47015 * 329.99955 * 11 9 7 15 15 C 1.38260 * 120.00977 * 0.23535 * 5 4 3 16 16 Br 1.89105 * 120.01662 * 179.72254 * 15 5 4 17 17 C 1.38408 * 120.00648 * 180.02562 * 2 1 3 18 18 F 1.35096 * 120.03096 * 359.95462 * 17 2 1 19 19 H 1.08997 * 109.47590 * 89.99427 * 1 2 3 20 20 H 1.08999 * 109.47339 * 210.00296 * 1 2 3 21 21 H 1.09004 * 109.46757 * 329.99481 * 1 2 3 22 22 H 1.08005 * 119.98128 * 0.04647 * 3 2 1 23 23 H 1.08000 * 119.97692 * 180.02562 * 4 3 2 24 24 H 1.08998 * 109.46890 * 339.99941 * 6 5 4 25 25 H 1.09002 * 109.46875 * 219.99743 * 6 5 4 26 26 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1978 -0.0005 5 6 4.2739 0.0016 -0.0016 6 6 5.7808 0.0043 -0.0028 7 6 6.2847 -0.2422 1.3959 8 1 5.5838 -0.3859 2.2049 9 6 7.6406 -0.2841 1.6428 10 7 8.0803 -0.4938 2.8645 11 14 8.8529 -0.0348 0.2438 12 1 9.1723 1.4099 0.1171 13 1 10.0975 -0.7941 0.5260 14 1 8.2525 -0.5221 -1.0242 15 6 3.5848 -1.1971 -0.0071 16 35 4.5328 -2.8333 -0.0165 17 6 2.1991 -1.1986 -0.0005 18 9 1.5244 -2.3690 -0.0001 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 1.6582 2.1323 0.0008 23 1 4.1196 2.1337 -0.0001 24 1 6.1421 0.9707 -0.3541 25 1 6.1450 -0.7821 -0.6640 26 1 9.0342 -0.5237 3.0381 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260397695.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:08 Heat of formation + Delta-G solvation = -30.132015 kcal Electronic energy + Delta-G solvation = -13269.315163 eV Core-core repulsion = 10694.285132 eV Total energy + Delta-G solvation = -2575.030031 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.991 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.64340 -38.93767 -34.20016 -32.36208 -31.25368 -29.46168 -28.71364 -25.84147 -22.47498 -22.20631 -20.38141 -16.87287 -16.65454 -16.31317 -15.47500 -15.17213 -14.26036 -13.72264 -13.28398 -13.11079 -12.96337 -12.54770 -12.31542 -11.99318 -11.62054 -11.31976 -11.06148 -10.59333 -10.27819 -10.17918 -10.05409 -9.51049 -9.26903 -8.58105 -8.23138 -7.99595 -6.07473 -4.06350 1.36531 1.53536 2.20328 3.27393 3.36219 3.38810 3.85082 4.40992 4.45403 4.87945 5.09851 5.24545 5.37351 5.49069 5.61616 5.66464 5.88255 6.09564 6.26651 6.42468 6.47128 6.67248 6.90607 7.15539 7.24806 7.63094 8.45217 8.95893 9.51889 11.05438 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.008905 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.220384 B = 3143.501303 C = 3848.962521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.144 4.144 3 C -0.081 4.081 4 C -0.128 4.128 5 C 0.018 3.982 6 C 0.007 3.993 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.076 3.924 10 N -0.897 5.897 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.263 1.263 15 C -0.124 4.124 16 Br -0.027 7.027 17 C 0.119 3.881 18 F -0.132 7.132 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.130 0.870 23 H 0.134 0.866 24 H 0.029 0.971 25 H 0.043 0.957 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.637 0.012 -7.708 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.146 4.146 3 C -0.099 4.099 4 C -0.147 4.147 5 C 0.016 3.984 6 C -0.030 4.030 7 C -0.542 4.542 8 H 0.093 0.907 9 C -0.126 4.126 10 N -0.535 5.535 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.187 1.187 15 C -0.205 4.205 16 Br 0.059 6.941 17 C 0.097 3.903 18 F -0.111 7.111 19 H 0.087 0.913 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.148 0.852 23 H 0.152 0.848 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.137 -0.684 -7.597 13.498 hybrid contribution 0.481 0.274 -0.500 0.746 sum -10.656 -0.410 -8.097 13.389 Atomic orbital electron populations 1.20620 0.90290 1.02966 1.02266 1.19669 0.96591 0.91498 1.06841 1.20929 0.94162 0.96666 0.98191 1.21148 0.93534 0.98117 1.01875 1.20175 0.98679 0.89966 0.89585 1.19032 0.85815 0.98292 0.99872 1.20686 0.92522 1.49614 0.91359 0.90735 1.24877 0.97998 0.94472 0.95264 1.69884 1.14431 1.49650 1.19549 0.86917 0.81191 0.78587 0.83630 1.20168 1.21169 1.18718 1.21809 0.91947 0.94371 1.12346 1.96646 1.75840 1.24199 1.97412 1.17190 0.88299 0.81363 1.03425 1.91468 1.79959 1.45893 1.93776 0.91330 0.91516 0.91209 0.85211 0.84812 0.95269 0.93920 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.83 36.00 0.35 -0.84 15 2 C -0.14 -2.18 5.88 -104.56 -0.62 -2.80 15 3 C -0.08 -1.17 9.70 -39.59 -0.38 -1.55 15 4 C -0.13 -2.18 9.67 -39.58 -0.38 -2.57 15 5 C 0.02 0.36 5.08 -104.60 -0.53 -0.17 15 6 C 0.01 0.16 3.59 -29.04 -0.10 0.06 15 7 C -0.50 -13.79 9.28 -34.44 -0.32 -14.11 15 8 H 0.07 2.26 7.98 -52.49 -0.42 1.84 15 9 C 0.08 2.14 5.47 -17.82 -0.10 2.04 15 10 N -0.90 -27.02 13.96 55.43 0.77 -26.25 15 11 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 15 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 14 H -0.26 -6.08 6.54 56.52 0.37 -5.71 15 15 C -0.12 -2.49 6.22 -39.45 -0.25 -2.73 15 16 Br -0.03 -0.55 31.28 -68.01 -2.13 -2.67 15 17 C 0.12 2.12 7.21 -39.40 -0.28 1.83 15 18 F -0.13 -2.30 15.94 2.25 0.04 -2.27 15 19 H 0.07 0.69 8.14 -51.93 -0.42 0.26 15 20 H 0.07 0.77 7.64 -51.93 -0.40 0.37 15 21 H 0.07 0.66 8.09 -51.93 -0.42 0.24 15 22 H 0.13 1.41 8.06 -52.48 -0.42 0.99 15 23 H 0.13 2.05 8.04 -52.49 -0.42 1.63 15 24 H 0.03 0.64 7.43 -51.93 -0.39 0.26 15 25 H 0.04 1.01 6.19 -51.93 -0.32 0.68 15 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 251.20 15.07 3.79 3.79 Total: -1.00 -29.63 251.20 -7.19 -36.81 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: -2.38 Total: -4.88 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -2.61 Total: -20.83 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.77 Total: -26.25 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.13 Total: -2.67 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.63 -7.19 -36.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260397695.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.680 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds