Wall clock time and date at job start Mon Mar 30 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 120.01072 * 2 1 4 4 C 1.38220 * 120.04584 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.06023 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99338 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 99.99950 * 6 5 4 8 8 H 1.08000 * 120.00563 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99902 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99792 * 179.72330 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47088 * 89.99795 * 11 9 7 13 13 H 1.48495 * 109.47293 * 209.99997 * 11 9 7 14 14 H 1.48507 * 109.47015 * 329.99955 * 11 9 7 15 15 C 1.38260 * 120.00977 * 0.23535 * 5 4 3 16 16 Br 1.89105 * 120.01662 * 179.72254 * 15 5 4 17 17 C 1.38408 * 120.00648 * 180.02562 * 2 1 3 18 18 F 1.35096 * 120.03096 * 359.95462 * 17 2 1 19 19 H 1.08997 * 109.47590 * 89.99427 * 1 2 3 20 20 H 1.08999 * 109.47339 * 210.00296 * 1 2 3 21 21 H 1.09004 * 109.46757 * 329.99481 * 1 2 3 22 22 H 1.08005 * 119.98128 * 0.04647 * 3 2 1 23 23 H 1.08000 * 119.97692 * 180.02562 * 4 3 2 24 24 H 1.08998 * 109.46890 * 339.99941 * 6 5 4 25 25 H 1.09002 * 109.46875 * 219.99743 * 6 5 4 26 26 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1978 -0.0005 5 6 4.2739 0.0016 -0.0016 6 6 5.7808 0.0043 -0.0028 7 6 6.2847 -0.2422 1.3959 8 1 5.5838 -0.3859 2.2049 9 6 7.6406 -0.2841 1.6428 10 7 8.0803 -0.4938 2.8645 11 14 8.8529 -0.0348 0.2438 12 1 9.1723 1.4099 0.1171 13 1 10.0975 -0.7941 0.5260 14 1 8.2525 -0.5221 -1.0242 15 6 3.5848 -1.1971 -0.0071 16 35 4.5328 -2.8333 -0.0165 17 6 2.1991 -1.1986 -0.0005 18 9 1.5244 -2.3690 -0.0001 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 1.6582 2.1323 0.0008 23 1 4.1196 2.1337 -0.0001 24 1 6.1421 0.9707 -0.3541 25 1 6.1450 -0.7821 -0.6640 26 1 9.0342 -0.5237 3.0381 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260397695.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:08 Heat of formation + Delta-G solvation = -46.709736 kcal Electronic energy + Delta-G solvation = -13270.034027 eV Core-core repulsion = 10694.285132 eV Total energy + Delta-G solvation = -2575.748895 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.991 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.99182 -40.27940 -35.80343 -34.20192 -32.70043 -31.03111 -30.12089 -27.33858 -24.17258 -23.53868 -21.83372 -18.95376 -18.09881 -17.68008 -16.82674 -16.51179 -16.16607 -15.10544 -14.77990 -14.44552 -14.30472 -14.06829 -13.67888 -13.43515 -13.16044 -12.78179 -12.45248 -12.34881 -11.92204 -11.79798 -11.67222 -11.53844 -10.90859 -10.72262 -9.61661 -9.39750 -8.24089 -6.26912 0.02100 0.19832 0.72357 1.36999 1.40548 1.50695 2.38446 2.51961 3.09339 3.14894 3.70796 3.92291 4.16317 4.23248 4.45267 4.77214 4.81831 4.89115 4.94260 5.05544 5.15372 5.24340 5.34829 5.55230 5.65519 5.87452 6.28429 6.75856 7.34655 8.92557 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.008905 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.220384 B = 3143.501303 C = 3848.962521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.131 4.131 3 C -0.066 4.066 4 C -0.129 4.129 5 C -0.019 4.019 6 C 0.013 3.987 7 C -0.496 4.496 8 H 0.029 0.971 9 C 0.017 3.983 10 N -0.948 5.948 11 Si 0.935 3.065 12 H -0.261 1.261 13 H -0.288 1.288 14 H -0.247 1.247 15 C -0.145 4.145 16 Br -0.047 7.047 17 C 0.100 3.900 18 F -0.134 7.134 19 H 0.088 0.912 20 H 0.062 0.938 21 H 0.098 0.902 22 H 0.178 0.822 23 H 0.151 0.849 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 1.848 -9.334 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.133 4.133 3 C -0.084 4.084 4 C -0.147 4.147 5 C -0.021 4.021 6 C -0.024 4.024 7 C -0.534 4.534 8 H 0.047 0.953 9 C -0.181 4.181 10 N -0.589 5.589 11 Si 0.758 3.242 12 H -0.185 1.185 13 H -0.214 1.214 14 H -0.171 1.171 15 C -0.225 4.225 16 Br 0.039 6.961 17 C 0.079 3.921 18 F -0.113 7.113 19 H 0.107 0.893 20 H 0.081 0.919 21 H 0.116 0.884 22 H 0.196 0.804 23 H 0.169 0.831 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.800 1.158 -9.240 15.829 hybrid contribution 0.819 -0.274 0.056 0.865 sum -11.981 0.884 -9.184 15.121 Atomic orbital electron populations 1.20759 0.87170 1.04251 1.03914 1.20231 0.98771 0.90474 1.03818 1.21418 0.93099 0.98315 0.95553 1.21434 0.95014 0.97411 1.00891 1.20059 0.97328 0.91598 0.93113 1.18844 0.88262 0.98501 0.96833 1.20814 0.91797 1.48311 0.92516 0.95287 1.25757 1.00138 0.94400 0.97760 1.70043 1.14896 1.51861 1.22076 0.85879 0.78323 0.79261 0.80714 1.18526 1.21389 1.17056 1.21959 0.93027 0.93627 1.13937 1.96594 1.76477 1.25498 1.97562 1.17438 0.87716 0.82460 1.04490 1.91458 1.79725 1.46216 1.93889 0.89331 0.91864 0.88374 0.80419 0.83120 0.93858 0.94520 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 9.83 71.23 0.70 -1.21 15 2 C -0.13 -3.52 5.88 -19.83 -0.12 -3.64 15 3 C -0.07 -1.62 9.70 22.26 0.22 -1.41 15 4 C -0.13 -4.07 9.67 22.27 0.22 -3.85 15 5 C -0.02 -0.77 5.08 -19.85 -0.10 -0.87 15 6 C 0.01 0.59 3.59 29.10 0.10 0.70 15 7 C -0.50 -27.79 9.28 25.60 0.24 -27.56 15 8 H 0.03 1.84 7.98 -2.91 -0.02 1.82 15 9 C 0.02 0.94 5.47 84.66 0.46 1.41 15 10 N -0.95 -58.86 13.96 21.45 0.30 -58.56 15 11 Si 0.93 43.23 27.47 68.60 1.88 45.11 15 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 15 13 H -0.29 -13.32 7.11 99.48 0.71 -12.62 15 14 H -0.25 -10.70 6.54 99.48 0.65 -10.05 15 15 C -0.15 -5.81 6.22 22.35 0.14 -5.67 15 16 Br -0.05 -1.95 31.28 -20.37 -0.64 -2.58 15 17 C 0.10 3.45 7.21 22.39 0.16 3.61 15 18 F -0.13 -4.57 15.94 44.97 0.72 -3.85 15 19 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.06 1.24 7.64 -2.39 -0.02 1.22 15 21 H 0.10 1.29 8.09 -2.39 -0.02 1.27 15 22 H 0.18 2.71 8.06 -2.91 -0.02 2.68 15 23 H 0.15 4.16 8.04 -2.91 -0.02 4.13 15 24 H 0.04 1.85 7.43 -2.39 -0.02 1.83 15 25 H 0.04 1.72 6.19 -2.39 -0.01 1.70 15 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 15 Total: -1.00 -66.45 251.20 5.42 -61.04 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: 1.13 Total: -2.67 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 2.02 Total: -38.48 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.30 Total: -58.56 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.72 Total: -3.85 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Atomic # 35 Polarization: -1.95 SS G_CDS: -0.64 Total: -2.58 kcal Total: -66.45 5.42 -61.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260397695.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.327 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds