Wall clock time and date at job start Mon Mar 30 2020 07:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00088 * 2 1 4 4 H 1.48504 * 109.47142 * 270.00543 * 3 2 1 5 5 H 1.48501 * 109.46891 * 30.00283 * 3 2 1 6 6 H 1.48500 * 109.47011 * 150.00206 * 3 2 1 7 7 C 1.37878 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00070 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99875 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.46655 * 179.97438 * 9 7 2 11 11 C 1.38290 * 119.99221 * 264.97152 * 10 9 7 12 12 C 1.38285 * 120.13248 * 180.02562 * 11 10 9 13 13 Br 1.89105 * 119.93563 * 179.97438 * 12 11 10 14 14 C 1.38357 * 120.13234 * 359.97438 * 12 11 10 15 15 C 1.38530 * 119.98847 * 359.72493 * 14 12 11 16 16 O 1.35994 * 120.07094 * 180.27108 * 15 14 12 17 17 C 1.38514 * 119.99872 * 85.00241 * 10 9 7 18 18 O 1.36008 * 120.06075 * 359.97438 * 17 10 9 19 19 H 0.97007 * 119.99927 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47434 * 59.99550 * 9 7 2 21 21 H 1.09001 * 109.46739 * 299.99678 * 9 7 2 22 22 H 1.07993 * 119.93203 * 0.02627 * 11 10 9 23 23 H 1.08005 * 120.01103 * 179.97438 * 14 12 11 24 24 H 0.96700 * 114.00026 * 270.30300 * 16 15 14 25 25 H 0.96700 * 114.00317 * 90.00254 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0137 -2.6149 -0.0010 11 6 4.3436 -3.2314 1.1921 12 6 4.8052 -4.5349 1.1956 13 35 5.2553 -5.3723 2.8303 14 6 4.9384 -5.2277 0.0054 15 6 4.6037 -4.6173 -1.1923 16 8 4.7287 -5.2985 -2.3626 17 6 4.1455 -3.3029 -1.1959 18 8 3.8216 -2.6976 -2.3700 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8887 21 1 3.8744 -0.6800 -0.8912 22 1 4.2404 -2.6938 2.1230 23 1 5.2996 -6.2456 0.0103 24 1 5.5956 -5.2058 -2.7810 25 1 4.5574 -2.2289 -2.7871 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260536974.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:05 Heat of formation + Delta-G solvation = -88.882465 kcal Electronic energy + Delta-G solvation = -13295.441787 eV Core-core repulsion = 10705.491356 eV Total energy + Delta-G solvation = -2589.950431 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.983 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.27149 -38.09554 -37.68068 -35.30327 -33.40291 -31.98870 -29.75615 -29.04154 -25.14318 -23.42942 -22.11837 -19.58333 -18.97563 -18.72574 -17.49158 -17.02993 -16.27234 -15.72254 -15.41428 -14.87520 -14.19943 -14.02504 -13.76830 -13.44950 -13.28824 -12.60177 -12.45984 -12.22576 -12.00037 -11.69724 -11.39035 -11.28724 -11.02996 -10.77798 -9.66674 -9.41592 -8.28203 -6.33733 -0.05577 0.16931 0.53800 1.37676 1.40336 1.51330 2.36426 2.39349 3.04185 3.11566 3.25316 3.82389 4.07237 4.29897 4.47892 4.74549 4.92581 4.99863 5.01845 5.14074 5.51102 5.59864 5.62467 6.24066 6.66770 6.70791 6.99174 7.28439 8.89236 Molecular weight = 271.98amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.006756 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.128844 B = 4143.770990 C = 5050.445275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.515 4.515 8 H 0.017 0.983 9 C 0.030 3.970 10 C -0.070 4.070 11 C -0.094 4.094 12 C -0.086 4.086 13 Br -0.034 7.034 14 C -0.115 4.115 15 C 0.087 3.913 16 O -0.491 6.491 17 C 0.086 3.914 18 O -0.492 6.492 19 H 0.267 0.733 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.137 0.863 23 H 0.162 0.838 24 H 0.409 0.591 25 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.580 -9.353 1.811 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.162 1.162 7 C -0.553 4.553 8 H 0.036 0.964 9 C -0.007 4.007 10 C -0.072 4.072 11 C -0.114 4.114 12 C -0.165 4.165 13 Br 0.052 6.948 14 C -0.135 4.135 15 C 0.041 3.959 16 O -0.304 6.304 17 C 0.040 3.960 18 O -0.304 6.304 19 H 0.076 0.924 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.155 0.845 23 H 0.180 0.820 24 H 0.269 0.731 25 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 16.487 -9.966 2.629 19.444 hybrid contribution 0.313 1.218 -0.659 1.420 sum 16.800 -8.748 1.970 19.043 Atomic orbital electron populations 1.70076 1.08566 1.28277 1.52408 1.26024 0.95616 1.03579 0.93911 0.85597 0.79624 0.77651 0.79382 1.18937 1.21079 1.16189 1.21035 0.90762 0.92708 1.50753 0.96407 1.18519 0.94197 0.89791 0.98214 1.20457 0.96005 0.98294 0.92452 1.21029 0.98435 0.93671 0.98295 1.21597 1.06761 0.95615 0.92530 1.96653 1.92176 1.79552 1.26450 1.21304 1.01421 1.01269 0.89507 1.18567 1.00834 0.89652 0.86859 1.84876 1.40633 1.70667 1.34191 1.18914 0.99561 0.91192 0.86312 1.84955 1.40045 1.71438 1.33919 0.92402 0.94247 0.94252 0.84503 0.82016 0.73146 0.74041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.68 13.96 21.45 0.30 -60.38 15 2 C 0.01 0.31 5.47 84.66 0.46 0.77 15 3 Si 0.96 43.16 27.47 68.60 1.88 45.05 15 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 15 6 H -0.24 -9.67 6.54 99.48 0.65 -9.02 15 7 C -0.51 -30.11 9.65 25.60 0.25 -29.86 15 8 H 0.02 1.19 7.98 -2.91 -0.02 1.17 15 9 C 0.03 1.37 3.89 29.10 0.11 1.49 15 10 C -0.07 -2.83 5.08 -19.79 -0.10 -2.93 15 11 C -0.09 -3.35 9.41 22.29 0.21 -3.14 15 12 C -0.09 -2.58 6.22 22.31 0.14 -2.44 15 13 Br -0.03 -0.84 33.69 -20.37 -0.69 -1.52 15 14 C -0.11 -3.19 9.72 22.37 0.22 -2.97 15 15 C 0.09 2.67 6.72 22.57 0.15 2.82 15 16 O -0.49 -12.61 13.29 -79.62 -1.06 -13.67 15 17 C 0.09 3.16 6.69 22.57 0.15 3.31 15 18 O -0.49 -17.91 12.42 -79.79 -0.99 -18.90 15 19 H 0.27 15.78 8.31 -92.70 -0.77 15.00 15 20 H 0.04 1.72 7.11 -2.39 -0.02 1.70 15 21 H 0.04 1.70 7.12 -2.39 -0.02 1.68 15 22 H 0.14 4.70 8.06 -2.91 -0.02 4.68 15 23 H 0.16 3.56 8.06 -2.91 -0.02 3.54 15 24 H 0.41 5.44 9.06 -74.06 -0.67 4.76 15 25 H 0.40 9.56 9.06 -74.06 -0.67 8.89 15 Total: -1.00 -73.62 249.20 0.89 -72.73 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -0.15 Total: 9.66 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 1.59 Total: -32.95 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.30 Total: -60.38 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -2.05 Total: -32.57 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -0.69 Total: -1.52 kcal Total: -73.62 0.89 -72.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536974.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.154 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds