Wall clock time and date at job start Mon Mar 30 2020 07:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46974 * 270.00089 * 3 2 1 5 5 H 1.48490 * 109.47083 * 30.00370 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00255 * 3 2 1 7 7 C 1.37875 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99629 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00333 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.29422 * 60.67158 * 9 7 2 11 11 C 1.54120 * 110.37617 * 182.88278 * 9 7 2 12 12 C 1.54219 * 101.73673 * 92.37104 * 11 9 7 13 13 C 1.52126 * 104.83587 * 26.45758 * 12 11 9 14 14 S 1.76536 * 139.37631 * 162.62787 * 13 12 11 15 15 C 1.75579 * 91.09002 * 180.02562 * 14 13 12 16 16 Br 1.89094 * 125.17787 * 179.97438 * 15 14 13 17 17 C 1.32717 * 109.64172 * 359.97009 * 15 14 13 18 18 C 1.33792 * 110.68004 * 342.58368 * 13 12 11 19 19 H 0.97001 * 119.99610 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.99336 * 334.24562 * 11 9 7 21 21 H 1.09003 * 110.94966 * 210.47548 * 11 9 7 22 22 H 1.08994 * 110.36453 * 267.62382 * 12 11 9 23 23 H 1.08994 * 110.36722 * 145.29637 * 12 11 9 24 24 H 1.08001 * 122.19321 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6288 -2.5756 -0.8933 11 6 2.2324 -3.6853 0.0705 12 6 2.3178 -3.9297 1.5909 13 6 0.9956 -3.4182 2.1424 14 16 0.0082 -3.5564 3.5993 15 6 -1.2098 -2.4927 2.9154 16 35 -2.8100 -1.9722 3.7779 17 6 -0.8362 -2.1096 1.7008 18 6 0.3923 -2.6173 1.2567 19 1 -0.4849 0.8401 0.0004 20 1 3.2061 -3.4120 -0.3360 21 1 1.8279 -4.5577 -0.4428 22 1 3.1493 -3.3699 2.0189 23 1 2.4290 -4.9939 1.7983 24 1 -1.4395 -1.4501 1.0946 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260719086.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:28 Heat of formation + Delta-G solvation = 32.015603 kcal Electronic energy + Delta-G solvation = -11578.837945 eV Core-core repulsion = 9436.882919 eV Total energy + Delta-G solvation = -2141.955026 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 271.957 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.50047 -34.08147 -32.48455 -30.52079 -27.88416 -26.21754 -24.10768 -21.37331 -19.83460 -17.69684 -16.57046 -16.19339 -14.52061 -14.16392 -13.82423 -12.96449 -12.42625 -12.32621 -11.88836 -11.38830 -11.06699 -10.73907 -10.66210 -10.56786 -10.51902 -10.27957 -9.93704 -9.72911 -9.43986 -9.26109 -8.51028 -7.66068 -7.27997 -6.11262 -4.18014 1.71762 1.76997 2.54658 2.70939 3.25497 3.33196 3.35279 3.79036 4.36277 5.19645 5.55620 5.71783 5.90551 6.20538 6.32830 6.67909 6.70956 6.74041 6.79931 7.11221 7.36163 7.43788 7.74205 7.82290 8.21547 8.83732 9.46959 10.94321 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.008900 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.162353 B = 3145.364715 C = 4096.724169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.099 3.901 10 H 0.037 0.963 11 C -0.113 4.113 12 C -0.026 4.026 13 C -0.222 4.222 14 S 0.078 5.922 15 C -0.230 4.230 16 Br -0.024 7.024 17 C -0.016 4.016 18 C -0.044 4.044 19 H 0.263 0.737 20 H 0.071 0.929 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -5.598 5.791 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.078 3.922 10 H 0.055 0.945 11 C -0.152 4.152 12 C -0.066 4.066 13 C -0.339 4.339 14 S 0.340 5.660 15 C -0.424 4.424 16 Br 0.060 6.940 17 C -0.050 4.050 18 C -0.057 4.057 19 H 0.072 0.928 20 H 0.090 0.910 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.880 -6.044 7.534 10.409 hybrid contribution 0.509 1.835 -1.225 2.264 sum -3.371 -4.209 6.309 8.300 Atomic orbital electron populations 1.69866 1.05978 1.26753 1.49269 1.24971 0.94883 0.99220 0.94528 0.86570 0.79922 0.83309 0.78128 1.20551 1.21168 1.19896 1.21071 0.92799 0.89616 1.51275 0.91999 1.18373 0.90700 0.92942 0.90189 0.94480 1.22358 1.00823 0.98528 0.93523 1.20644 0.91540 0.98503 0.95931 1.25846 1.03067 1.08216 0.96779 1.83401 1.13450 1.49815 1.19354 1.25346 1.00269 1.14630 1.02182 1.96491 1.27919 1.91199 1.78434 1.20245 0.96213 0.95693 0.92822 1.21056 0.92099 0.92403 1.00102 0.92764 0.91005 0.92913 0.90920 0.92688 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.78 10.44 55.43 0.58 -23.20 14 2 C 0.07 1.77 5.32 -17.82 -0.09 1.68 14 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 14 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 14 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 14 7 C -0.51 -13.26 8.53 -34.44 -0.29 -13.56 14 8 H 0.06 1.58 7.58 -52.48 -0.40 1.18 14 9 C 0.10 2.35 2.84 -91.29 -0.26 2.09 14 10 H 0.04 0.95 8.14 -51.93 -0.42 0.52 14 11 C -0.11 -2.19 6.62 -25.51 -0.17 -2.36 14 12 C -0.03 -0.49 6.79 -26.54 -0.18 -0.67 14 13 C -0.22 -4.68 7.35 -35.16 -0.26 -4.94 14 14 S 0.08 1.48 23.34 -107.50 -2.51 -1.03 14 15 C -0.23 -4.73 6.93 28.85 0.20 -4.53 14 16 Br -0.02 -0.41 34.06 -68.01 -2.32 -2.72 14 17 C -0.02 -0.37 9.02 -40.75 -0.37 -0.74 14 18 C -0.04 -1.04 5.30 -104.41 -0.55 -1.59 14 19 H 0.26 6.84 8.31 -40.82 -0.34 6.50 14 20 H 0.07 1.32 7.75 -51.93 -0.40 0.92 14 21 H 0.05 0.92 8.14 -51.93 -0.42 0.49 14 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 14 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 14 24 H 0.16 3.86 6.79 -52.49 -0.36 3.50 14 LS Contribution 240.41 15.07 3.62 3.62 Total: -1.00 -26.38 240.41 -9.60 -35.99 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: -1.98 Total: -3.78 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -1.98 Total: -24.61 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.58 Total: -23.20 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.51 Total: -1.03 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.32 Total: -2.72 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -26.38 -9.60 -35.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719086.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.004 kcal (2) G-P(sol) polarization free energy of solvation -26.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds