Wall clock time and date at job start Mon Mar 30 2020 07:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46974 * 270.00089 * 3 2 1 5 5 H 1.48490 * 109.47083 * 30.00370 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00255 * 3 2 1 7 7 C 1.37875 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99629 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00333 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.29422 * 60.67158 * 9 7 2 11 11 C 1.54120 * 110.37617 * 182.88278 * 9 7 2 12 12 C 1.54219 * 101.73673 * 92.37104 * 11 9 7 13 13 C 1.52126 * 104.83587 * 26.45758 * 12 11 9 14 14 S 1.76536 * 139.37631 * 162.62787 * 13 12 11 15 15 C 1.75579 * 91.09002 * 180.02562 * 14 13 12 16 16 Br 1.89094 * 125.17787 * 179.97438 * 15 14 13 17 17 C 1.32717 * 109.64172 * 359.97009 * 15 14 13 18 18 C 1.33792 * 110.68004 * 342.58368 * 13 12 11 19 19 H 0.97001 * 119.99610 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.99336 * 334.24562 * 11 9 7 21 21 H 1.09003 * 110.94966 * 210.47548 * 11 9 7 22 22 H 1.08994 * 110.36453 * 267.62382 * 12 11 9 23 23 H 1.08994 * 110.36722 * 145.29637 * 12 11 9 24 24 H 1.08001 * 122.19321 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6288 -2.5756 -0.8933 11 6 2.2324 -3.6853 0.0705 12 6 2.3178 -3.9297 1.5909 13 6 0.9956 -3.4182 2.1424 14 16 0.0082 -3.5564 3.5993 15 6 -1.2098 -2.4927 2.9154 16 35 -2.8100 -1.9722 3.7779 17 6 -0.8362 -2.1096 1.7008 18 6 0.3923 -2.6173 1.2567 19 1 -0.4849 0.8401 0.0004 20 1 3.2061 -3.4120 -0.3360 21 1 1.8279 -4.5577 -0.4428 22 1 3.1493 -3.3699 2.0189 23 1 2.4290 -4.9939 1.7983 24 1 -1.4395 -1.4501 1.0946 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260719086.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:28 Heat of formation + Delta-G solvation = 19.458405 kcal Electronic energy + Delta-G solvation = -11579.382466 eV Core-core repulsion = 9436.882919 eV Total energy + Delta-G solvation = -2142.499547 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 271.957 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.14987 -35.73246 -34.40265 -32.05109 -29.66337 -27.82219 -25.96749 -22.98926 -21.49026 -19.46774 -18.30327 -17.91206 -16.42931 -15.81739 -15.46249 -14.55365 -14.16978 -14.02036 -13.49861 -13.14409 -12.87130 -12.49237 -12.36224 -12.21227 -12.11631 -11.91892 -11.59205 -11.23244 -11.19871 -10.97136 -10.49448 -9.23957 -8.91672 -8.07728 -6.21484 0.08523 0.18597 0.97324 1.07506 1.40687 1.43012 1.50719 2.05733 2.43865 3.20265 3.98903 4.14869 4.45783 4.59946 4.86519 5.00549 5.10868 5.17028 5.24922 5.49020 5.54314 5.69267 5.83139 6.00248 6.28758 6.86636 7.45398 8.94730 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.008900 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.162353 B = 3145.364715 C = 4096.724169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.087 3.913 10 H 0.003 0.997 11 C -0.106 4.106 12 C -0.023 4.023 13 C -0.224 4.224 14 S 0.143 5.857 15 C -0.240 4.240 16 Br 0.005 6.995 17 C -0.043 4.043 18 C -0.082 4.082 19 H 0.259 0.741 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -6.512 7.143 9.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.067 3.933 10 H 0.021 0.979 11 C -0.144 4.144 12 C -0.063 4.063 13 C -0.342 4.342 14 S 0.406 5.594 15 C -0.435 4.435 16 Br 0.088 6.912 17 C -0.077 4.077 18 C -0.094 4.094 19 H 0.068 0.932 20 H 0.098 0.902 21 H 0.089 0.911 22 H 0.095 0.905 23 H 0.109 0.891 24 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.999 -6.969 8.884 11.682 hybrid contribution 0.163 2.081 -1.606 2.634 sum -2.836 -4.887 7.278 9.214 Atomic orbital electron populations 1.70017 1.06954 1.26916 1.50126 1.25661 0.95615 1.02004 0.94691 0.85722 0.78823 0.79969 0.78157 1.20026 1.21623 1.19400 1.21405 0.92991 0.90905 1.50803 0.91989 1.18395 0.91353 0.94110 0.89452 0.97889 1.22308 0.99972 0.97290 0.94874 1.20727 0.90166 1.00679 0.94733 1.26314 1.03698 1.06795 0.97352 1.83105 1.11306 1.47975 1.17051 1.25661 1.01773 1.14209 1.01823 1.96499 1.26153 1.91103 1.77406 1.20083 0.96720 0.96964 0.93914 1.21014 0.93094 0.94606 1.00716 0.93174 0.90243 0.91054 0.90488 0.89073 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.15 10.44 21.45 0.22 -49.92 14 2 C 0.02 1.11 5.32 84.65 0.45 1.56 14 3 Si 0.95 42.88 29.54 68.60 2.03 44.90 14 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 14 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 14 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 14 7 C -0.52 -27.47 8.53 25.60 0.22 -27.25 14 8 H 0.06 3.15 7.58 -2.91 -0.02 3.13 14 9 C 0.09 4.23 2.84 -11.23 -0.03 4.20 14 10 H 0.00 0.16 8.14 -2.39 -0.02 0.14 14 11 C -0.11 -3.92 6.62 31.39 0.21 -3.72 14 12 C -0.02 -0.80 6.79 30.72 0.21 -0.59 14 13 C -0.22 -9.03 7.35 25.13 0.18 -8.85 14 14 S 0.14 5.09 23.34 -56.49 -1.32 3.77 14 15 C -0.24 -9.65 6.93 66.65 0.46 -9.19 14 16 Br 0.01 0.18 34.06 -20.37 -0.69 -0.52 14 17 C -0.04 -2.00 9.02 21.56 0.19 -1.81 14 18 C -0.08 -3.87 5.30 -19.73 -0.10 -3.97 14 19 H 0.26 13.93 8.31 -92.71 -0.77 13.16 14 20 H 0.08 2.79 7.75 -2.39 -0.02 2.77 14 21 H 0.07 2.35 8.14 -2.39 -0.02 2.33 14 22 H 0.08 2.59 8.14 -2.39 -0.02 2.57 14 23 H 0.09 2.48 8.14 -2.39 -0.02 2.46 14 24 H 0.13 6.79 6.79 -2.91 -0.02 6.77 14 Total: -1.00 -56.36 240.41 3.24 -53.12 By element: Atomic # 1 Polarization: -2.96 SS G_CDS: 1.21 Total: -1.74 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 1.79 Total: -49.61 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.22 Total: -49.92 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.32 Total: 3.77 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -0.69 Total: -0.52 kcal Total: -56.36 3.24 -53.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719086.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.583 kcal (2) G-P(sol) polarization free energy of solvation -56.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds