Wall clock time and date at job start Mon Mar 30 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86797 * 120.00251 * 2 1 4 4 H 1.48503 * 109.47216 * 240.00001 * 3 2 1 5 5 H 1.48502 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47298 * 119.99937 * 3 2 1 7 7 C 1.39840 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 163.00739 * 7 2 1 9 9 C 1.41206 * 119.99912 * 343.00518 * 7 2 1 10 10 C 1.41144 * 120.06947 * 334.08718 * 9 7 2 11 11 C 1.35740 * 120.10324 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 119.57179 * 180.02562 * 11 10 9 13 13 C 1.40633 * 120.84963 * 0.04413 * 11 10 9 14 14 S 1.76005 * 130.24721 * 179.97438 * 13 11 10 15 15 C 1.75264 * 92.24713 * 179.83363 * 14 13 11 16 16 C 1.31711 * 111.49406 * 0.34689 * 15 14 13 17 17 C 1.40017 * 120.18020 * 359.97438 * 13 11 10 18 18 C 1.40081 * 120.06498 * 154.08708 * 9 7 2 19 19 Cl 1.73595 * 120.01659 * 0.02562 * 18 9 7 20 20 H 0.97003 * 119.99808 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.94334 * 0.02562 * 10 9 7 22 22 H 1.08005 * 124.25380 * 180.23836 * 15 14 13 23 23 H 1.07996 * 122.56018 * 179.85565 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0970 1.6963 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0970 1.6963 1.2125 7 6 2.0083 -1.2111 -0.0005 8 1 3.0530 -1.2314 -0.2739 9 6 1.3485 -2.4074 0.3564 10 6 0.2225 -2.3675 1.2064 11 6 -0.4127 -3.5170 1.5495 12 17 -1.7967 -3.4518 2.5954 13 6 0.0364 -4.7601 1.0690 14 16 -0.5886 -6.3812 1.3506 15 6 0.6429 -7.1067 0.3363 16 6 1.4557 -6.1974 -0.1612 17 6 1.1512 -4.8273 0.2246 18 6 1.8102 -3.6362 -0.1326 19 17 3.1951 -3.6899 -1.1778 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1348 -1.4207 1.5838 22 1 0.7260 -8.1664 0.1447 23 1 2.2819 -6.4488 -0.8097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306784136.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:18 Heat of formation + Delta-G solvation = -1.440138 kcal Electronic energy + Delta-G solvation = -13800.443344 eV Core-core repulsion = 11176.341324 eV Total energy + Delta-G solvation = -2624.102020 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 271.952 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.06474 -37.48984 -36.91304 -36.65839 -34.64201 -31.54014 -30.00759 -27.50030 -24.24868 -23.04476 -21.56524 -19.35418 -18.42836 -17.33649 -16.71550 -16.20347 -15.59571 -14.96823 -14.91394 -14.76505 -14.02353 -13.34772 -13.14580 -13.11348 -12.95666 -12.75317 -12.59561 -12.13936 -12.01364 -11.89055 -11.69536 -11.41841 -11.07909 -10.96525 -9.93843 -9.31843 -8.87304 -8.46858 -6.46674 0.03374 0.47172 0.83718 1.16615 1.34487 1.38979 1.42709 1.52099 1.63804 1.92474 2.16802 2.48625 3.34504 3.90873 4.37340 4.49560 4.72313 4.91887 5.03608 5.14729 5.19603 5.34326 5.51321 5.66003 5.88462 6.29329 6.58468 6.68688 8.14817 Molecular weight = 271.95amu Principal moments of inertia in cm(-1) A = 0.019886 B = 0.008520 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.704859 B = 3285.642089 C = 4611.197156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.040 3.960 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.457 4.457 8 H 0.094 0.906 9 C 0.102 3.898 10 C -0.125 4.125 11 C 0.013 3.987 12 Cl -0.085 7.085 13 C -0.252 4.252 14 S 0.068 5.932 15 C -0.174 4.174 16 C -0.136 4.136 17 C -0.027 4.027 18 C -0.151 4.151 19 Cl -0.090 7.090 20 H 0.297 0.703 21 H 0.133 0.867 22 H 0.201 0.799 23 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -5.341 1.064 5.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.484 4.484 8 H 0.112 0.888 9 C 0.097 3.903 10 C -0.147 4.147 11 C -0.018 4.018 12 Cl -0.057 7.057 13 C -0.367 4.367 14 S 0.328 5.672 15 C -0.308 4.308 16 C -0.167 4.167 17 C -0.035 4.035 18 C -0.182 4.182 19 Cl -0.061 7.061 20 H 0.108 0.892 21 H 0.150 0.850 22 H 0.218 0.782 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.738 -5.825 1.868 6.161 hybrid contribution 1.283 1.429 -0.858 2.103 sum 0.545 -4.396 1.010 4.544 Atomic orbital electron populations 1.69838 1.08999 1.31757 1.32315 1.26821 0.95495 1.04712 0.90846 0.85208 0.78903 0.75206 0.80397 1.18255 1.18928 1.18105 1.19861 0.98701 0.91097 1.38774 0.88832 1.17384 0.91049 0.92124 0.89728 1.20897 0.97927 0.96172 0.99662 1.19838 0.91438 0.92973 0.97533 1.98273 1.42628 1.98779 1.65996 1.21964 1.05255 0.96549 1.12907 1.83446 1.34831 0.95104 1.53820 1.25281 0.98775 1.04352 1.02362 1.21001 1.02503 0.89461 1.03754 1.18981 0.94244 0.93295 0.97003 1.20657 0.97563 0.93159 1.06847 1.98183 1.42809 1.98677 1.66476 0.89153 0.84967 0.78206 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.41 10.98 21.81 0.24 -38.17 14 2 C 0.04 1.82 5.14 85.22 0.44 2.26 14 3 Si 0.98 35.00 29.59 68.60 2.03 37.03 14 4 H -0.26 -9.04 7.11 99.48 0.71 -8.33 14 5 H -0.27 -8.92 7.11 99.48 0.71 -8.21 14 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 14 7 C -0.46 -22.50 8.47 23.39 0.20 -22.30 14 8 H 0.09 4.49 7.09 -2.91 -0.02 4.47 14 9 C 0.10 5.17 5.55 -21.39 -0.12 5.05 14 10 C -0.13 -6.19 8.33 22.40 0.19 -6.00 14 11 C 0.01 0.58 6.30 22.28 0.14 0.72 14 12 Cl -0.09 -3.37 28.68 -2.72 -0.08 -3.45 14 13 C -0.25 -10.95 6.38 23.29 0.15 -10.80 14 14 S 0.07 2.34 22.95 -56.49 -1.30 1.04 14 15 C -0.17 -5.19 11.01 67.12 0.74 -4.45 14 16 C -0.14 -4.77 10.01 23.46 0.23 -4.54 14 17 C -0.03 -1.19 6.00 -20.35 -0.12 -1.31 14 18 C -0.15 -7.15 6.44 23.32 0.15 -7.00 14 19 Cl -0.09 -3.74 27.21 -2.72 -0.07 -3.81 14 20 H 0.30 12.78 8.30 -92.71 -0.77 12.01 14 21 H 0.13 6.70 6.21 -2.91 -0.02 6.68 14 22 H 0.20 4.09 8.06 -2.91 -0.02 4.06 14 23 H 0.15 4.72 8.02 -2.91 -0.02 4.70 14 Total: -1.00 -52.71 252.04 4.08 -48.63 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.27 Total: 7.10 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 1.99 Total: -48.37 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.24 Total: -38.17 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.30 Total: 1.04 kcal Atomic # 17 Polarization: -7.11 SS G_CDS: -0.15 Total: -7.26 kcal Total: -52.71 4.08 -48.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306784136.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.187 kcal (2) G-P(sol) polarization free energy of solvation -52.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds