Wall clock time and date at job start Mon Mar 30 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31118 * 1 3 3 Si 1.86801 * 119.99751 * 2 1 4 4 H 1.48506 * 109.47392 * 269.99880 * 3 2 1 5 5 H 1.48501 * 109.47455 * 30.00085 * 3 2 1 6 6 H 1.48505 * 109.46924 * 150.00357 * 3 2 1 7 7 C 1.39675 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00108 * 160.57706 * 7 2 1 9 9 C 1.40765 * 119.99703 * 340.84204 * 7 2 1 10 10 C 1.36667 * 123.32566 * 317.87084 * 9 7 2 11 11 Cl 1.73599 * 124.03425 * 359.97438 * 10 9 7 12 12 S 1.69978 * 111.93068 * 179.84473 * 10 9 7 13 13 C 1.75788 * 93.24302 * 0.35413 * 12 10 9 14 14 C 1.39825 * 130.16483 * 179.78156 * 13 12 10 15 15 C 1.37624 * 120.40706 * 180.02562 * 14 13 12 16 16 C 1.38638 * 120.20629 * 0.02562 * 15 14 13 17 17 C 1.37558 * 120.24180 * 359.97438 * 16 15 14 18 18 Cl 1.73607 * 119.85494 * 179.97438 * 17 16 15 19 19 C 1.39331 * 110.21470 * 359.80128 * 13 12 10 20 20 H 0.96999 * 119.99927 * 5.53127 * 1 2 3 21 21 H 1.07999 * 119.79597 * 359.97438 * 14 13 12 22 22 H 1.08001 * 119.89924 * 180.02562 * 15 14 13 23 23 H 1.07999 * 119.87827 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 14 2.2451 1.6178 0.0000 4 1 2.4927 2.0465 -1.4001 5 1 1.4426 2.6527 0.7000 6 1 3.5427 1.4402 0.7000 7 6 2.0096 -1.2096 -0.0005 8 1 3.0435 -1.2360 -0.3116 9 6 1.3642 -2.3951 0.3990 10 6 0.5246 -2.4669 1.4749 11 17 0.1363 -1.1178 2.4962 12 16 -0.0970 -4.0340 1.6916 13 6 0.7791 -4.6802 0.3113 14 6 0.8101 -5.9771 -0.2104 15 6 1.5778 -6.2651 -1.3157 16 6 2.3286 -5.2697 -1.9220 17 6 2.3111 -3.9878 -1.4234 18 17 3.2557 -2.7493 -2.1901 19 6 1.5313 -3.6760 -0.2945 20 1 -0.4850 0.8361 -0.0810 21 1 0.2288 -6.7578 0.2574 22 1 1.5954 -7.2695 -1.7121 23 1 2.9289 -5.5015 -2.7894 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307131015.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:04 Heat of formation + Delta-G solvation = 18.561426 kcal Electronic energy + Delta-G solvation = -14018.059921 eV Core-core repulsion = 11394.825234 eV Total energy + Delta-G solvation = -2623.234687 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 271.952 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.74982 -35.67138 -35.45002 -34.27633 -32.40367 -30.04229 -28.27492 -25.90668 -22.59653 -21.77032 -19.81950 -17.43721 -16.76044 -15.35698 -14.93794 -14.61851 -14.37050 -13.52846 -13.31173 -13.01668 -12.10979 -11.76895 -11.69062 -11.48271 -11.28800 -11.16979 -10.80583 -10.74578 -10.24301 -9.92929 -9.75245 -9.49394 -9.25141 -8.74164 -8.32110 -7.38620 -6.76895 -6.55131 -4.35716 1.55930 1.70483 2.41344 2.87839 2.98936 3.13014 3.18268 3.36295 3.52048 4.00902 4.16513 4.29909 5.07904 5.31193 5.51696 5.63125 5.96788 6.10492 6.41606 6.66703 6.80910 6.90676 7.20232 7.31987 7.64122 8.33182 8.63737 8.84625 10.28798 Molecular weight = 271.95amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.010941 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.142663 B = 2558.507081 C = 3903.676045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.084 3.916 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.430 4.430 8 H 0.090 0.910 9 C 0.107 3.893 10 C -0.289 4.289 11 Cl -0.048 7.048 12 S 0.090 5.910 13 C -0.130 4.130 14 C -0.094 4.094 15 C -0.113 4.113 16 C -0.138 4.138 17 C 0.016 3.984 18 Cl -0.065 7.065 19 C -0.050 4.050 20 H 0.279 0.721 21 H 0.120 0.880 22 H 0.125 0.875 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -6.598 -1.524 7.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.462 4.462 8 H 0.108 0.892 9 C 0.097 3.903 10 C -0.432 4.432 11 Cl -0.020 7.020 12 S 0.351 5.649 13 C -0.247 4.247 14 C -0.119 4.119 15 C -0.133 4.133 16 C -0.160 4.160 17 C -0.013 4.013 18 Cl -0.035 7.035 19 C -0.060 4.060 20 H 0.090 0.910 21 H 0.138 0.862 22 H 0.143 0.857 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.768 -6.667 -0.308 6.718 hybrid contribution 1.155 1.844 -1.122 2.448 sum 1.923 -4.823 -1.431 5.386 Atomic orbital electron populations 1.69939 1.07423 1.29314 1.32586 1.25620 0.94505 1.00427 0.93112 0.86458 0.80971 0.81391 0.79048 1.19680 1.20177 1.18343 1.18999 0.98845 0.89865 1.38449 0.89169 1.17072 0.93548 0.90288 0.89433 1.23066 1.22622 0.91606 1.05864 1.98159 1.93348 1.44954 1.65538 1.81834 1.51773 1.01804 1.29459 1.22581 1.03481 0.96911 1.01681 1.20408 1.00511 0.93940 0.96993 1.20668 0.97871 0.98528 0.96280 1.20662 1.02578 0.91195 1.01585 1.20666 0.96323 0.89474 0.94798 1.98330 1.70679 1.54405 1.80135 1.19334 0.97007 0.94784 0.94918 0.91035 0.86238 0.85661 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.97 10.99 55.54 0.61 -19.36 14 2 C 0.08 2.10 4.23 -17.32 -0.07 2.03 14 3 Si 0.90 19.40 29.61 -169.99 -5.03 14.37 14 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 14 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 14 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 14 7 C -0.43 -11.06 7.55 -38.09 -0.29 -11.35 14 8 H 0.09 2.27 6.28 -52.49 -0.33 1.94 14 9 C 0.11 2.73 5.37 -106.13 -0.57 2.16 14 10 C -0.29 -7.20 6.35 30.16 0.19 -7.01 14 11 Cl -0.05 -1.17 25.77 -51.86 -1.34 -2.50 14 12 S 0.09 1.91 22.95 -107.50 -2.47 -0.56 14 13 C -0.13 -2.73 6.44 -38.58 -0.25 -2.98 14 14 C -0.09 -1.61 10.06 -39.21 -0.39 -2.00 14 15 C -0.11 -1.72 10.03 -39.66 -0.40 -2.11 14 16 C -0.14 -2.30 9.79 -39.68 -0.39 -2.69 14 17 C 0.02 0.32 6.37 -38.90 -0.25 0.07 14 18 Cl -0.06 -1.28 25.86 -51.86 -1.34 -2.62 14 19 C -0.05 -1.14 6.01 -105.18 -0.63 -1.78 14 20 H 0.28 6.76 8.31 -40.82 -0.34 6.42 14 21 H 0.12 1.68 8.06 -52.49 -0.42 1.26 14 22 H 0.13 1.43 8.06 -52.49 -0.42 1.01 14 23 H 0.13 1.74 8.06 -52.49 -0.42 1.32 14 LS Contribution 247.45 15.07 3.73 3.73 Total: -1.00 -27.09 247.45 -9.62 -36.70 By element: Atomic # 1 Polarization: -3.38 SS G_CDS: -0.73 Total: -4.11 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -3.05 Total: -25.65 kcal Atomic # 7 Polarization: -19.97 SS G_CDS: 0.61 Total: -19.36 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.47 Total: -0.56 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -2.68 Total: -5.12 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.09 -9.62 -36.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307131015.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.266 kcal (2) G-P(sol) polarization free energy of solvation -27.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds