Wall clock time and date at job start Mon Mar 30 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31118 * 1 3 3 Si 1.86801 * 119.99751 * 2 1 4 4 H 1.48506 * 109.47392 * 269.99880 * 3 2 1 5 5 H 1.48501 * 109.47455 * 30.00085 * 3 2 1 6 6 H 1.48505 * 109.46924 * 150.00357 * 3 2 1 7 7 C 1.39675 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00108 * 160.57706 * 7 2 1 9 9 C 1.40765 * 119.99703 * 340.84204 * 7 2 1 10 10 C 1.36667 * 123.32566 * 317.87084 * 9 7 2 11 11 Cl 1.73599 * 124.03425 * 359.97438 * 10 9 7 12 12 S 1.69978 * 111.93068 * 179.84473 * 10 9 7 13 13 C 1.75788 * 93.24302 * 0.35413 * 12 10 9 14 14 C 1.39825 * 130.16483 * 179.78156 * 13 12 10 15 15 C 1.37624 * 120.40706 * 180.02562 * 14 13 12 16 16 C 1.38638 * 120.20629 * 0.02562 * 15 14 13 17 17 C 1.37558 * 120.24180 * 359.97438 * 16 15 14 18 18 Cl 1.73607 * 119.85494 * 179.97438 * 17 16 15 19 19 C 1.39331 * 110.21470 * 359.80128 * 13 12 10 20 20 H 0.96999 * 119.99927 * 5.53127 * 1 2 3 21 21 H 1.07999 * 119.79597 * 359.97438 * 14 13 12 22 22 H 1.08001 * 119.89924 * 180.02562 * 15 14 13 23 23 H 1.07999 * 119.87827 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 14 2.2451 1.6178 0.0000 4 1 2.4927 2.0465 -1.4001 5 1 1.4426 2.6527 0.7000 6 1 3.5427 1.4402 0.7000 7 6 2.0096 -1.2096 -0.0005 8 1 3.0435 -1.2360 -0.3116 9 6 1.3642 -2.3951 0.3990 10 6 0.5246 -2.4669 1.4749 11 17 0.1363 -1.1178 2.4962 12 16 -0.0970 -4.0340 1.6916 13 6 0.7791 -4.6802 0.3113 14 6 0.8101 -5.9771 -0.2104 15 6 1.5778 -6.2651 -1.3157 16 6 2.3286 -5.2697 -1.9220 17 6 2.3111 -3.9878 -1.4234 18 17 3.2557 -2.7493 -2.1901 19 6 1.5313 -3.6760 -0.2945 20 1 -0.4850 0.8361 -0.0810 21 1 0.2288 -6.7578 0.2574 22 1 1.5954 -7.2695 -1.7121 23 1 2.9289 -5.5015 -2.7894 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307131015.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:04 Heat of formation + Delta-G solvation = 5.355084 kcal Electronic energy + Delta-G solvation = -14018.632591 eV Core-core repulsion = 11394.825234 eV Total energy + Delta-G solvation = -2623.807357 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 271.952 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.23893 -37.27673 -37.10936 -36.05746 -34.13910 -31.47756 -29.89079 -27.71250 -24.14464 -23.25232 -21.51752 -18.98157 -18.56066 -17.02014 -16.40717 -16.25797 -15.88188 -14.99277 -14.90034 -14.75042 -13.84442 -13.35705 -13.31120 -13.09081 -12.99552 -12.75376 -12.42107 -12.32164 -11.90002 -11.67208 -11.35172 -11.09278 -11.04011 -10.50413 -9.89500 -9.02265 -8.60416 -8.27319 -6.24610 0.03957 0.27309 0.80833 1.25159 1.36447 1.36891 1.46359 1.65987 1.83295 2.22942 2.36089 2.74775 3.23436 4.08140 4.13149 4.33822 4.53671 4.72626 5.00288 5.22439 5.33022 5.42526 5.46459 5.81748 5.94577 6.44486 6.78632 6.96572 8.44802 Molecular weight = 271.95amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.010941 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.142663 B = 2558.507081 C = 3903.676045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.054 3.946 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.454 4.454 8 H 0.086 0.914 9 C 0.084 3.916 10 C -0.316 4.316 11 Cl -0.057 7.057 12 S 0.105 5.895 13 C -0.145 4.145 14 C -0.093 4.093 15 C -0.089 4.089 16 C -0.125 4.125 17 C -0.008 4.008 18 Cl -0.071 7.071 19 C -0.092 4.092 20 H 0.281 0.719 21 H 0.154 0.846 22 H 0.180 0.820 23 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 -8.952 -2.632 9.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.104 0.896 9 C 0.073 3.927 10 C -0.458 4.458 11 Cl -0.029 7.029 12 S 0.366 5.634 13 C -0.261 4.261 14 C -0.116 4.116 15 C -0.110 4.110 16 C -0.147 4.147 17 C -0.036 4.036 18 Cl -0.042 7.042 19 C -0.102 4.102 20 H 0.091 0.909 21 H 0.172 0.828 22 H 0.197 0.803 23 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.217 -9.033 -1.424 9.225 hybrid contribution 1.053 2.342 -0.849 2.705 sum 2.270 -6.690 -2.273 7.421 Atomic orbital electron populations 1.69994 1.08493 1.29903 1.34329 1.26186 0.94990 1.02700 0.92477 0.85709 0.79769 0.78314 0.79350 1.18761 1.19849 1.18428 1.19124 0.98878 0.90760 1.39823 0.89606 1.17518 0.93673 0.91759 0.89737 1.23512 1.23172 0.92959 1.06171 1.98134 1.93421 1.45737 1.65597 1.81489 1.52066 0.99532 1.30303 1.22895 1.03425 0.98294 1.01461 1.20925 1.00581 0.92873 0.97266 1.21314 0.94927 1.00354 0.94406 1.21183 1.01911 0.89742 1.01859 1.20972 0.96897 0.90878 0.94855 1.98318 1.70745 1.55191 1.79983 1.19448 0.99549 0.94439 0.96789 0.90896 0.82803 0.80281 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.76 10.99 21.79 0.24 -42.52 14 2 C 0.05 2.75 4.23 85.15 0.36 3.11 14 3 Si 0.95 40.37 29.61 68.60 2.03 42.40 14 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 14 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 14 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 14 7 C -0.45 -23.95 7.55 23.24 0.18 -23.78 14 8 H 0.09 4.45 6.28 -2.91 -0.02 4.43 14 9 C 0.08 4.37 5.37 -20.84 -0.11 4.26 14 10 C -0.32 -16.07 6.35 67.45 0.43 -15.64 14 11 Cl -0.06 -2.83 25.77 -2.72 -0.07 -2.90 14 12 S 0.11 4.45 22.95 -56.49 -1.30 3.16 14 13 C -0.14 -5.84 6.44 22.92 0.15 -5.69 14 14 C -0.09 -2.76 10.06 22.51 0.23 -2.54 14 15 C -0.09 -2.22 10.03 22.22 0.22 -2.00 14 16 C -0.13 -3.68 9.79 22.20 0.22 -3.46 14 17 C -0.01 -0.30 6.37 22.71 0.14 -0.16 14 18 Cl -0.07 -2.79 25.86 -2.72 -0.07 -2.86 14 19 C -0.09 -4.22 6.01 -20.23 -0.12 -4.34 14 20 H 0.28 13.99 8.31 -92.71 -0.77 13.22 14 21 H 0.15 3.52 8.06 -2.91 -0.02 3.49 14 22 H 0.18 2.64 8.06 -2.91 -0.02 2.61 14 23 H 0.16 3.59 8.06 -2.91 -0.02 3.57 14 Total: -1.00 -60.46 247.45 3.79 -56.67 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: 1.26 Total: -3.72 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 1.69 Total: -50.23 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.24 Total: -42.52 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.30 Total: 3.16 kcal Atomic # 17 Polarization: -5.62 SS G_CDS: -0.14 Total: -5.76 kcal Total: -60.46 3.79 -56.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307131015.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.028 kcal (2) G-P(sol) polarization free energy of solvation -60.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds