Wall clock time and date at job start Mon Mar 30 2020 07:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31082 * 1 3 3 Si 1.86797 * 119.99689 * 2 1 4 4 H 1.48497 * 109.47451 * 270.09212 * 3 2 1 5 5 H 1.48501 * 109.47127 * 30.09877 * 3 2 1 6 6 H 1.48502 * 109.46956 * 150.09638 * 3 2 1 7 7 C 1.39704 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00531 * 347.42110 * 7 2 1 9 9 C 1.40806 * 119.99870 * 167.42027 * 7 2 1 10 10 C 1.36450 * 123.29898 * 328.37587 * 9 7 2 11 11 S 1.69986 * 111.95125 * 179.75638 * 10 9 7 12 12 C 1.75782 * 93.23210 * 0.24370 * 11 10 9 13 13 C 1.39340 * 110.18493 * 0.02562 * 12 11 10 14 14 C 1.40672 * 119.24083 * 180.02562 * 13 12 11 15 15 Cl 1.73608 * 119.84037 * 179.97438 * 14 13 12 16 16 C 1.37597 * 120.31600 * 359.95476 * 14 13 12 17 17 C 1.38597 * 120.25703 * 0.04604 * 16 14 13 18 18 C 1.37757 * 120.19113 * 359.97438 * 17 16 14 19 19 Cl 1.73601 * 119.81257 * 180.02562 * 18 17 16 20 20 H 0.96996 * 120.00284 * 359.97438 * 1 2 3 21 21 H 1.07997 * 124.02410 * 0.02562 * 10 9 7 22 22 H 1.07997 * 119.86574 * 180.02562 * 16 14 13 23 23 H 1.07996 * 119.90039 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 2.4903 2.0476 -1.4000 5 1 1.4431 2.6521 0.7021 6 1 3.5433 1.4396 0.6980 7 6 2.0093 -1.2099 -0.0005 8 1 1.4888 -2.1341 0.2027 9 6 3.3920 -1.2244 -0.2661 10 6 4.0048 -0.3316 -1.0964 11 16 5.6785 -0.6088 -1.2036 12 6 5.6217 -1.9829 -0.1088 13 6 4.3139 -2.2032 0.3188 14 6 4.0503 -3.2625 1.2061 15 17 2.4268 -3.5507 1.7493 16 6 5.0731 -4.0715 1.6452 17 6 6.3724 -3.8488 1.2175 18 6 6.6484 -2.8157 0.3490 19 17 8.2794 -2.5461 -0.1810 20 1 -0.4850 0.8400 0.0004 21 1 3.4886 0.4597 -1.6196 22 1 4.8624 -4.8829 2.3261 23 1 7.1708 -4.4871 1.5661 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307412001.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:45 Heat of formation + Delta-G solvation = 14.895665 kcal Electronic energy + Delta-G solvation = -13896.674774 eV Core-core repulsion = 11273.281127 eV Total energy + Delta-G solvation = -2623.393647 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 271.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.06860 -36.42679 -35.78340 -35.04786 -32.77521 -30.05684 -29.00438 -26.02840 -23.00179 -22.09588 -19.92340 -17.67487 -16.98369 -15.70387 -15.42243 -14.68147 -14.56646 -13.90996 -13.79504 -13.00557 -12.39125 -12.07015 -12.02586 -11.72343 -11.65446 -11.24946 -10.99019 -10.79117 -10.67708 -10.26646 -9.98039 -9.77851 -9.44147 -9.26639 -8.51097 -7.87385 -7.00663 -6.92931 -4.51317 1.21469 1.42506 2.22695 2.47971 2.77806 2.93060 3.15258 3.19107 3.36112 3.45516 3.96763 3.99209 4.98372 5.10451 5.24495 5.55802 5.70559 6.06913 6.21607 6.34163 6.47010 6.78010 6.95614 7.27263 7.51659 8.24587 8.35327 8.71418 10.04926 Molecular weight = 271.95amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.009399 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.954749 B = 2978.373485 C = 4188.591362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.086 3.914 3 Si 0.912 3.088 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.413 4.413 8 H 0.110 0.890 9 C 0.086 3.914 10 C -0.450 4.450 11 S 0.103 5.897 12 C -0.124 4.124 13 C -0.048 4.048 14 C 0.019 3.981 15 Cl -0.049 7.049 16 C -0.132 4.132 17 C -0.095 4.095 18 C -0.015 4.015 19 Cl -0.077 7.077 20 H 0.286 0.714 21 H 0.144 0.856 22 H 0.137 0.863 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 -4.635 2.396 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.133 4.133 3 Si 0.739 3.261 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.167 1.167 7 C -0.444 4.444 8 H 0.127 0.873 9 C 0.077 3.923 10 C -0.585 4.585 11 S 0.367 5.633 12 C -0.241 4.241 13 C -0.060 4.060 14 C -0.009 4.009 15 Cl -0.019 7.019 16 C -0.155 4.155 17 C -0.116 4.116 18 C -0.048 4.048 19 Cl -0.049 7.049 20 H 0.096 0.904 21 H 0.162 0.838 22 H 0.155 0.845 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.937 -3.704 1.545 10.717 hybrid contribution -1.033 0.190 0.711 1.268 sum 8.904 -3.515 2.256 9.835 Atomic orbital electron populations 1.69736 1.07801 1.30236 1.35489 1.26085 0.94821 1.01396 0.91031 0.86222 0.80875 0.79709 0.79256 1.19822 1.22098 1.16683 1.19321 0.90064 0.96517 1.38539 0.87256 1.17404 0.93586 0.89636 0.91661 1.23894 0.97027 1.17357 1.20172 1.81945 1.08138 1.25448 1.47732 1.22513 0.94878 1.02078 1.04623 1.19341 0.92304 0.96734 0.97611 1.20827 0.86697 0.95900 0.97510 1.98366 1.20391 1.95050 1.88141 1.20605 0.90960 1.00859 1.03087 1.20597 0.96684 0.96870 0.97466 1.20133 0.84157 0.98867 1.01682 1.98328 1.20667 1.96163 1.89704 0.90383 0.83841 0.84512 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.21 13.94 55.54 0.77 -20.43 14 2 C 0.09 2.21 5.49 -17.32 -0.10 2.12 14 3 Si 0.91 20.99 24.62 -169.99 -4.19 16.81 14 4 H -0.27 -6.14 6.62 56.52 0.37 -5.77 14 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 14 6 H -0.24 -5.76 6.83 56.52 0.39 -5.37 14 7 C -0.41 -10.78 8.68 -38.06 -0.33 -11.11 14 8 H 0.11 2.92 5.78 -52.49 -0.30 2.61 14 9 C 0.09 2.13 5.18 -106.18 -0.55 1.58 14 10 C -0.45 -10.71 8.00 30.09 0.24 -10.47 14 11 S 0.10 2.12 22.67 -107.50 -2.44 -0.32 14 12 C -0.12 -2.54 6.33 -38.55 -0.24 -2.78 14 13 C -0.05 -1.08 6.01 -105.18 -0.63 -1.71 14 14 C 0.02 0.38 6.37 -38.90 -0.25 0.13 14 15 Cl -0.05 -0.95 25.64 -51.86 -1.33 -2.27 14 16 C -0.13 -2.08 9.79 -39.68 -0.39 -2.47 14 17 C -0.09 -1.43 9.80 -39.62 -0.39 -1.82 14 18 C -0.02 -0.26 6.35 -39.13 -0.25 -0.51 14 19 Cl -0.08 -1.17 28.70 -51.86 -1.49 -2.66 14 20 H 0.29 6.85 8.30 -40.82 -0.34 6.51 14 21 H 0.14 3.47 4.89 -52.49 -0.26 3.22 14 22 H 0.14 1.73 8.06 -52.49 -0.42 1.30 14 23 H 0.14 1.59 8.06 -52.49 -0.42 1.17 14 LS Contribution 243.20 15.07 3.67 3.67 Total: -1.00 -26.25 243.20 -8.47 -34.72 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: -0.58 Total: -2.45 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -2.88 Total: -27.05 kcal Atomic # 7 Polarization: -21.21 SS G_CDS: 0.77 Total: -20.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.19 Total: 16.81 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.44 Total: -0.32 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -2.82 Total: -4.93 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.25 -8.47 -34.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307412001.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.613 kcal (2) G-P(sol) polarization free energy of solvation -26.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds