Wall clock time and date at job start Mon Mar 30 2020 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31082 * 1 3 3 Si 1.86797 * 119.99689 * 2 1 4 4 H 1.48497 * 109.47451 * 270.09212 * 3 2 1 5 5 H 1.48501 * 109.47127 * 30.09877 * 3 2 1 6 6 H 1.48502 * 109.46956 * 150.09638 * 3 2 1 7 7 C 1.39704 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00531 * 347.42110 * 7 2 1 9 9 C 1.40806 * 119.99870 * 167.42027 * 7 2 1 10 10 C 1.36450 * 123.29898 * 328.37587 * 9 7 2 11 11 S 1.69986 * 111.95125 * 179.75638 * 10 9 7 12 12 C 1.75782 * 93.23210 * 0.24370 * 11 10 9 13 13 C 1.39340 * 110.18493 * 0.02562 * 12 11 10 14 14 C 1.40672 * 119.24083 * 180.02562 * 13 12 11 15 15 Cl 1.73608 * 119.84037 * 179.97438 * 14 13 12 16 16 C 1.37597 * 120.31600 * 359.95476 * 14 13 12 17 17 C 1.38597 * 120.25703 * 0.04604 * 16 14 13 18 18 C 1.37757 * 120.19113 * 359.97438 * 17 16 14 19 19 Cl 1.73601 * 119.81257 * 180.02562 * 18 17 16 20 20 H 0.96996 * 120.00284 * 359.97438 * 1 2 3 21 21 H 1.07997 * 124.02410 * 0.02562 * 10 9 7 22 22 H 1.07997 * 119.86574 * 180.02562 * 16 14 13 23 23 H 1.07996 * 119.90039 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 2.4903 2.0476 -1.4000 5 1 1.4431 2.6521 0.7021 6 1 3.5433 1.4396 0.6980 7 6 2.0093 -1.2099 -0.0005 8 1 1.4888 -2.1341 0.2027 9 6 3.3920 -1.2244 -0.2661 10 6 4.0048 -0.3316 -1.0964 11 16 5.6785 -0.6088 -1.2036 12 6 5.6217 -1.9829 -0.1088 13 6 4.3139 -2.2032 0.3188 14 6 4.0503 -3.2625 1.2061 15 17 2.4268 -3.5507 1.7493 16 6 5.0731 -4.0715 1.6452 17 6 6.3724 -3.8488 1.2175 18 6 6.6484 -2.8157 0.3490 19 17 8.2794 -2.5461 -0.1810 20 1 -0.4850 0.8400 0.0004 21 1 3.4886 0.4597 -1.6196 22 1 4.8624 -4.8829 2.3261 23 1 7.1708 -4.4871 1.5661 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307412001.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:44 Heat of formation + Delta-G solvation = 1.242823 kcal Electronic energy + Delta-G solvation = -13897.266805 eV Core-core repulsion = 11273.281127 eV Total energy + Delta-G solvation = -2623.985678 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 271.952 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.55151 -37.78316 -37.29513 -36.65579 -34.57749 -31.51820 -30.56741 -27.86221 -24.54305 -23.57730 -21.63835 -19.21720 -18.79681 -17.33439 -16.87616 -16.33736 -16.05614 -15.47755 -15.29155 -14.77864 -14.14946 -13.58831 -13.47787 -13.31014 -13.15411 -12.96865 -12.59336 -12.43773 -12.04219 -11.89857 -11.54402 -11.44139 -11.15054 -11.09516 -10.04719 -9.46417 -8.86591 -8.62405 -6.42837 -0.27278 -0.01666 0.74333 1.05940 1.11790 1.27298 1.30293 1.39993 1.56241 1.71490 2.12248 2.42433 3.10314 3.70959 3.89532 4.18316 4.31201 4.57812 4.69903 4.92619 5.03044 5.14254 5.37260 5.58094 5.67641 6.31386 6.46063 6.79327 8.18449 Molecular weight = 271.95amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.009399 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.954749 B = 2978.373485 C = 4188.591362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.054 3.946 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.441 4.441 8 H 0.094 0.906 9 C 0.073 3.927 10 C -0.459 4.459 11 S 0.125 5.875 12 C -0.137 4.137 13 C -0.086 4.086 14 C 0.000 4.000 15 Cl -0.058 7.058 16 C -0.110 4.110 17 C -0.072 4.072 18 C -0.021 4.021 19 Cl -0.054 7.054 20 H 0.292 0.708 21 H 0.134 0.866 22 H 0.177 0.823 23 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.953 -5.894 3.227 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.161 4.161 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.473 4.473 8 H 0.112 0.888 9 C 0.063 3.937 10 C -0.594 4.594 11 S 0.389 5.611 12 C -0.254 4.254 13 C -0.096 4.096 14 C -0.028 4.028 15 Cl -0.028 7.028 16 C -0.132 4.132 17 C -0.093 4.093 18 C -0.054 4.054 19 Cl -0.025 7.025 20 H 0.102 0.898 21 H 0.151 0.849 22 H 0.194 0.806 23 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 12.723 -4.973 2.379 13.866 hybrid contribution -1.662 0.400 0.472 1.774 sum 11.061 -4.573 2.851 12.304 Atomic orbital electron populations 1.69762 1.08564 1.31073 1.37863 1.26601 0.95297 1.03358 0.90874 0.85574 0.79472 0.77651 0.79223 1.19461 1.20822 1.17906 1.19366 0.91088 0.96280 1.40549 0.88849 1.17642 0.93563 0.90820 0.91684 1.24090 0.99421 1.16520 1.19387 1.81646 1.05067 1.26138 1.48243 1.22690 0.95301 1.02572 1.04859 1.19373 0.92546 0.98049 0.99681 1.21109 0.87360 0.96405 0.97965 1.98362 1.21357 1.95009 1.88102 1.21121 0.90145 1.00156 1.01805 1.21180 0.97464 0.95663 0.94999 1.20375 0.84721 0.98627 1.01659 1.98343 1.18513 1.96112 1.89520 0.89778 0.84864 0.80583 0.79777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.95 13.94 21.80 0.30 -45.65 14 2 C 0.05 2.86 5.49 85.16 0.47 3.33 14 3 Si 0.96 44.07 24.62 68.60 1.69 45.76 14 4 H -0.27 -12.06 6.62 99.48 0.66 -11.40 14 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 14 6 H -0.26 -12.09 6.83 99.48 0.68 -11.41 14 7 C -0.44 -23.81 8.68 23.25 0.20 -23.61 14 8 H 0.09 5.21 5.78 -2.91 -0.02 5.20 14 9 C 0.07 3.64 5.18 -20.88 -0.11 3.54 14 10 C -0.46 -22.09 8.00 67.40 0.54 -21.55 14 11 S 0.12 5.03 22.67 -56.49 -1.28 3.75 14 12 C -0.14 -5.39 6.33 22.94 0.15 -5.24 14 13 C -0.09 -3.76 6.01 -20.23 -0.12 -3.88 14 14 C 0.00 0.01 6.37 22.71 0.14 0.15 14 15 Cl -0.06 -2.22 25.64 -2.72 -0.07 -2.29 14 16 C -0.11 -3.01 9.79 22.20 0.22 -2.79 14 17 C -0.07 -1.80 9.80 22.24 0.22 -1.58 14 18 C -0.02 -0.64 6.35 22.56 0.14 -0.49 14 19 Cl -0.05 -1.43 28.70 -2.72 -0.08 -1.50 14 20 H 0.29 14.44 8.30 -92.71 -0.77 13.67 14 21 H 0.13 6.56 4.89 -2.91 -0.01 6.55 14 22 H 0.18 3.45 8.06 -2.91 -0.02 3.43 14 23 H 0.19 2.93 8.06 -2.91 -0.02 2.91 14 Total: -1.00 -58.27 243.20 3.61 -54.66 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: 1.20 Total: -2.60 kcal Atomic # 6 Polarization: -53.97 SS G_CDS: 1.85 Total: -52.13 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.30 Total: -45.65 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.69 Total: 45.76 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.28 Total: 3.75 kcal Atomic # 17 Polarization: -3.64 SS G_CDS: -0.15 Total: -3.79 kcal Total: -58.27 3.61 -54.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307412001.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.900 kcal (2) G-P(sol) polarization free energy of solvation -58.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds