Wall clock time and date at job start Mon Mar 30 2020 07:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48499 * 109.47548 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47233 * 300.00136 * 3 2 1 6 6 H 1.48500 * 109.46790 * 60.00064 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38106 * 119.95273 * 90.00121 * 10 9 7 12 12 C 1.38965 * 119.93896 * 179.97438 * 11 10 9 13 13 S 1.76197 * 120.07534 * 179.97438 * 12 11 10 14 14 C 1.38972 * 119.84855 * 0.02562 * 12 11 10 15 15 C 1.38152 * 119.91050 * 359.97438 * 14 12 11 16 16 Br 1.89100 * 119.96926 * 179.97438 * 15 14 12 17 17 C 1.38266 * 119.95464 * 269.73386 * 10 9 7 18 18 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 21 21 H 1.08007 * 120.03051 * 359.97438 * 11 10 9 22 22 H 1.34505 * 103.00047 * 89.99915 * 13 12 11 23 23 H 1.08005 * 120.04164 * 179.97438 * 14 12 11 24 24 H 1.07993 * 119.92261 * 359.97169 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6784 -4.1688 1.1961 12 6 3.5810 -5.2254 1.1957 13 16 4.1555 -5.8964 2.7203 14 6 4.0303 -5.7509 -0.0098 15 6 3.5780 -5.2218 -1.2031 16 35 4.1888 -5.9351 -2.8445 17 6 2.6747 -4.1730 -1.1985 18 1 -0.4849 0.8400 0.0004 19 1 0.6241 -2.5566 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.3276 -3.7578 2.1313 22 1 3.2576 -6.8629 2.9829 23 1 4.7321 -6.5719 -0.0137 24 1 2.3189 -3.7642 -2.1326 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307532535.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:38 Heat of formation + Delta-G solvation = 1.171402 kcal Electronic energy + Delta-G solvation = -10982.513548 eV Core-core repulsion = 8839.221017 eV Total energy + Delta-G solvation = -2143.292531 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 271.957 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.32358 -35.60563 -33.64431 -32.90823 -30.41166 -29.07724 -25.43754 -23.80036 -22.18788 -18.82699 -18.47081 -17.57016 -16.65008 -16.60314 -15.96257 -14.83986 -14.61592 -14.33613 -13.98501 -13.42411 -13.17015 -12.81847 -12.61154 -12.40800 -12.03692 -11.75425 -11.66646 -11.32467 -11.20755 -10.61888 -9.82861 -9.64309 -9.18503 -8.22544 -6.34796 -0.17513 0.16390 0.43757 0.72003 1.40479 1.42234 1.54635 1.78693 2.38089 2.60181 3.10329 3.81460 4.04367 4.10992 4.33518 4.37901 4.80762 4.99119 5.12815 5.15753 5.30992 5.67172 5.71868 5.77204 6.12947 6.77400 7.34414 8.87430 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.006588 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.598871 B = 4248.926196 C = 5409.407453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.058 3.942 10 C -0.057 4.057 11 C -0.067 4.067 12 C -0.108 4.108 13 S -0.115 6.115 14 C -0.059 4.059 15 C -0.097 4.097 16 Br -0.035 7.035 17 C -0.075 4.075 18 H 0.266 0.734 19 H 0.012 0.988 20 H 0.013 0.987 21 H 0.134 0.866 22 H 0.087 0.913 23 H 0.162 0.838 24 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -13.649 -2.145 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.060 4.060 11 C -0.088 4.088 12 C -0.220 4.220 13 S 0.042 5.958 14 C -0.082 4.082 15 C -0.178 4.178 16 Br 0.050 6.950 17 C -0.094 4.094 18 H 0.075 0.925 19 H 0.030 0.970 20 H 0.031 0.969 21 H 0.152 0.848 22 H 0.051 0.949 23 H 0.179 0.821 24 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.353 -14.025 -1.958 16.971 hybrid contribution -1.291 0.934 -0.437 1.652 sum 8.062 -13.090 -2.395 15.559 Atomic orbital electron populations 1.70066 1.07552 1.27955 1.51116 1.25848 0.95704 1.02921 0.94512 0.85442 0.79024 0.78990 0.77918 1.18954 1.20272 1.20223 1.21372 0.93158 0.91026 1.51176 0.92579 1.18132 0.92639 0.90390 0.96801 1.20410 0.97458 0.95508 0.92608 1.21677 0.94530 0.94014 0.98564 1.21205 1.03434 1.01347 0.96051 1.85827 1.39971 1.45478 1.24545 1.21594 0.98162 0.99289 0.89107 1.21809 1.02762 1.00697 0.92508 1.96652 1.88060 1.84289 1.25957 1.21246 0.95316 0.94032 0.98855 0.92511 0.96982 0.96896 0.84823 0.94868 0.82068 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.08 13.29 21.45 0.28 -53.79 14 2 C 0.01 0.49 5.46 84.65 0.46 0.95 14 3 Si 0.96 43.22 29.54 68.60 2.03 45.25 14 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 14 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 14 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 14 7 C -0.53 -28.98 9.09 25.60 0.23 -28.74 14 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 14 9 C 0.06 2.90 5.10 29.10 0.15 3.05 14 10 C -0.06 -2.35 5.07 -19.89 -0.10 -2.45 14 11 C -0.07 -2.44 9.44 22.41 0.21 -2.23 14 12 C -0.11 -3.30 6.11 22.62 0.14 -3.17 14 13 S -0.12 -2.91 25.78 -56.49 -1.46 -4.37 14 14 C -0.06 -1.68 9.53 22.43 0.21 -1.46 14 15 C -0.10 -2.97 6.22 22.29 0.14 -2.83 14 16 Br -0.03 -0.88 33.70 -20.37 -0.69 -1.57 14 17 C -0.07 -2.72 9.44 22.32 0.21 -2.51 14 18 H 0.27 14.56 8.31 -92.71 -0.77 13.79 14 19 H 0.01 0.64 8.08 -2.39 -0.02 0.62 14 20 H 0.01 0.68 8.08 -2.39 -0.02 0.66 14 21 H 0.13 4.84 8.06 -2.91 -0.02 4.82 14 22 H 0.09 1.93 9.07 73.35 0.67 2.59 14 23 H 0.16 3.65 8.06 -2.91 -0.02 3.63 14 24 H 0.13 4.76 8.06 -2.91 -0.02 4.74 14 Total: -1.00 -57.44 254.55 3.71 -53.73 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: 1.88 Total: 0.15 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 1.66 Total: -39.40 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.28 Total: -53.79 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -1.46 Total: -4.37 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.69 Total: -1.57 kcal Total: -57.44 3.71 -53.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307532535.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.901 kcal (2) G-P(sol) polarization free energy of solvation -57.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds