Wall clock time and date at job start Mon Mar 30 2020 07:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47253 * 299.99718 * 3 2 1 6 6 H 1.48500 * 109.47351 * 60.00156 * 3 2 1 7 7 C 1.37881 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.38271 * 119.99018 * 270.27967 * 10 9 7 12 12 C 1.38219 * 120.05287 * 180.27975 * 11 10 9 13 13 C 1.38227 * 120.02402 * 359.44048 * 12 11 10 14 14 C 1.50699 * 120.01020 * 180.30126 * 13 12 11 15 15 Br 1.96594 * 109.46983 * 90.00423 * 14 13 12 16 16 C 1.38435 * 119.97401 * 0.28161 * 13 12 11 17 17 F 1.35097 * 120.02386 * 180.02562 * 16 13 12 18 18 C 1.38173 * 119.98826 * 90.00355 * 10 9 7 19 19 H 0.97004 * 119.99904 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47266 * 60.00518 * 9 7 2 21 21 H 1.09000 * 109.47175 * 300.00269 * 9 7 2 22 22 H 1.08000 * 119.97453 * 359.97438 * 11 10 9 23 23 H 1.08002 * 119.99072 * 179.72656 * 12 11 10 24 24 H 1.09002 * 109.47180 * 210.00303 * 14 13 12 25 25 H 1.08999 * 109.47311 * 330.00254 * 14 13 12 26 26 H 1.08004 * 120.01046 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0015 11 6 2.6829 -4.1667 -1.1962 12 6 3.5766 -5.2211 -1.1980 13 6 4.0278 -5.7473 -0.0021 14 6 5.0075 -6.8924 -0.0044 15 35 6.8419 -6.1854 -0.0065 16 6 3.5798 -5.2216 1.1977 17 9 4.0206 -5.7348 2.3671 18 6 2.6799 -4.1691 1.1981 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5576 -0.8881 21 1 0.6246 -2.5563 0.8919 22 1 2.3340 -3.7535 -2.1311 23 1 3.9261 -5.6310 -2.1341 24 1 4.8545 -7.5032 0.8854 25 1 4.8519 -7.5019 -0.8946 26 1 2.3293 -3.7585 2.1335 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307607112.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:15 Heat of formation + Delta-G solvation = -41.605541 kcal Electronic energy + Delta-G solvation = -12965.035438 eV Core-core repulsion = 10389.507877 eV Total energy + Delta-G solvation = -2575.527560 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.991 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.58052 -38.78342 -34.17744 -32.55520 -30.42844 -30.04932 -28.08778 -25.25714 -22.77046 -22.35800 -20.38083 -16.63980 -16.31613 -16.19197 -15.49161 -15.27762 -14.56649 -13.65878 -13.43407 -13.25634 -12.90479 -12.63663 -12.50222 -11.60081 -11.36968 -11.15432 -10.95789 -10.64170 -10.56618 -9.92824 -9.80321 -9.63559 -9.51431 -8.51230 -8.39050 -7.95893 -6.13072 -4.17563 1.20248 1.67577 2.18886 3.25639 3.33720 3.39035 4.10605 4.40598 4.53865 4.59945 4.81060 5.20824 5.26551 5.33630 5.64810 5.79126 5.90132 6.32367 6.41894 6.59752 6.81602 6.93641 7.32793 7.45760 7.63772 7.82573 8.18709 8.87712 9.47254 10.96862 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.005056 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.703398 B = 5536.116993 C = 5863.414901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.045 3.955 10 C 0.005 3.995 11 C -0.132 4.132 12 C -0.076 4.076 13 C -0.167 4.167 14 C -0.023 4.023 15 Br -0.163 7.163 16 C 0.111 3.889 17 F -0.144 7.144 18 C -0.157 4.157 19 H 0.263 0.737 20 H 0.035 0.965 21 H 0.033 0.967 22 H 0.129 0.871 23 H 0.125 0.875 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.641 -14.160 -1.206 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.008 3.992 10 C 0.004 3.996 11 C -0.150 4.150 12 C -0.095 4.095 13 C -0.168 4.168 14 C -0.137 4.137 15 Br -0.083 7.083 16 C 0.091 3.909 17 F -0.123 7.123 18 C -0.176 4.176 19 H 0.072 0.928 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.147 0.853 23 H 0.142 0.858 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.150 -13.854 -1.158 17.213 hybrid contribution 0.141 0.742 0.245 0.794 sum 10.292 -13.112 -0.913 16.694 Atomic orbital electron populations 1.69957 1.06055 1.26921 1.50149 1.25002 0.94902 0.99355 0.94941 0.86454 0.80196 0.83262 0.77701 1.19563 1.20851 1.20867 1.21049 0.93161 0.89575 1.51537 0.92225 1.18450 0.92478 0.89352 0.98938 1.20673 0.94249 0.93671 0.90971 1.21159 0.98523 0.96458 0.98870 1.20774 0.96600 0.96110 0.96027 1.19250 1.02935 1.01538 0.93114 1.23337 0.86408 0.97066 1.06894 1.97402 1.22217 1.89065 1.99599 1.17501 0.97539 0.95644 0.80196 1.91437 1.88286 1.86091 1.46464 1.21104 0.99461 0.96638 1.00397 0.92754 0.94700 0.94880 0.85312 0.85752 0.87754 0.87421 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.86 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.52 -13.93 9.09 -34.44 -0.31 -14.25 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.04 1.09 5.10 -29.04 -0.15 0.94 15 10 C 0.01 0.10 5.07 -104.63 -0.53 -0.43 15 11 C -0.13 -2.33 9.70 -39.58 -0.38 -2.72 15 12 C -0.08 -1.14 9.70 -39.59 -0.38 -1.52 15 13 C -0.17 -2.50 5.20 -104.55 -0.54 -3.05 15 14 C -0.02 -0.27 6.56 36.01 0.24 -0.03 15 15 Br -0.16 -2.16 33.92 -68.01 -2.31 -4.47 15 16 C 0.11 1.90 7.24 -39.42 -0.29 1.62 15 17 F -0.14 -2.40 16.48 2.25 0.04 -2.37 15 18 C -0.16 -3.00 9.68 -39.52 -0.38 -3.38 15 19 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 20 H 0.03 0.88 8.09 -51.93 -0.42 0.46 15 21 H 0.03 0.85 8.09 -51.93 -0.42 0.43 15 22 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 23 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 24 H 0.10 1.16 7.64 -51.93 -0.40 0.76 15 25 H 0.11 1.01 8.09 -51.93 -0.42 0.59 15 26 H 0.13 2.51 8.06 -52.48 -0.42 2.09 15 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -28.19 259.46 -7.94 -36.14 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -2.47 Total: -3.20 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.83 Total: -21.26 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.74 Total: -24.86 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 35 Polarization: -2.16 SS G_CDS: -2.31 Total: -4.47 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.19 -7.94 -36.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307607112.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.470 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds