Wall clock time and date at job start Mon Mar 30 2020 07:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47253 * 299.99718 * 3 2 1 6 6 H 1.48500 * 109.47351 * 60.00156 * 3 2 1 7 7 C 1.37881 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.38271 * 119.99018 * 270.27967 * 10 9 7 12 12 C 1.38219 * 120.05287 * 180.27975 * 11 10 9 13 13 C 1.38227 * 120.02402 * 359.44048 * 12 11 10 14 14 C 1.50699 * 120.01020 * 180.30126 * 13 12 11 15 15 Br 1.96594 * 109.46983 * 90.00423 * 14 13 12 16 16 C 1.38435 * 119.97401 * 0.28161 * 13 12 11 17 17 F 1.35097 * 120.02386 * 180.02562 * 16 13 12 18 18 C 1.38173 * 119.98826 * 90.00355 * 10 9 7 19 19 H 0.97004 * 119.99904 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47266 * 60.00518 * 9 7 2 21 21 H 1.09000 * 109.47175 * 300.00269 * 9 7 2 22 22 H 1.08000 * 119.97453 * 359.97438 * 11 10 9 23 23 H 1.08002 * 119.99072 * 179.72656 * 12 11 10 24 24 H 1.09002 * 109.47180 * 210.00303 * 14 13 12 25 25 H 1.08999 * 109.47311 * 330.00254 * 14 13 12 26 26 H 1.08004 * 120.01046 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0015 11 6 2.6829 -4.1667 -1.1962 12 6 3.5766 -5.2211 -1.1980 13 6 4.0278 -5.7473 -0.0021 14 6 5.0075 -6.8924 -0.0044 15 35 6.8419 -6.1854 -0.0065 16 6 3.5798 -5.2216 1.1977 17 9 4.0206 -5.7348 2.3671 18 6 2.6799 -4.1691 1.1981 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5576 -0.8881 21 1 0.6246 -2.5563 0.8919 22 1 2.3340 -3.7535 -2.1311 23 1 3.9261 -5.6310 -2.1341 24 1 4.8545 -7.5032 0.8854 25 1 4.8519 -7.5019 -0.8946 26 1 2.3293 -3.7585 2.1335 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307607112.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:15 Heat of formation + Delta-G solvation = -55.618312 kcal Electronic energy + Delta-G solvation = -12965.643077 eV Core-core repulsion = 10389.507877 eV Total energy + Delta-G solvation = -2576.135200 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.991 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.92352 -40.16817 -35.83335 -34.25155 -31.76013 -31.44582 -29.58833 -26.80572 -24.43815 -23.74031 -21.82129 -18.56347 -17.93776 -17.53021 -16.79138 -16.65121 -16.44745 -14.97313 -14.59561 -14.53293 -14.30854 -14.20242 -14.15269 -13.20674 -13.12265 -12.69379 -12.57297 -12.42968 -12.25556 -11.53064 -11.48950 -10.83999 -10.78422 -10.62577 -9.77271 -9.39674 -8.22786 -6.35339 -0.02460 0.30790 1.06264 1.39238 1.40992 1.53569 2.38260 2.76250 3.09125 3.25329 3.43726 3.72914 4.05647 4.22791 4.43488 4.47890 4.49878 4.95081 5.04387 5.13699 5.31203 5.32526 5.40109 5.71864 5.91244 5.96937 6.14827 6.77122 7.33572 8.86933 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.005056 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.703398 B = 5536.116993 C = 5863.414901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.053 3.947 10 C -0.024 4.024 11 C -0.136 4.136 12 C -0.061 4.061 13 C -0.151 4.151 14 C -0.021 4.021 15 Br -0.172 7.172 16 C 0.105 3.895 17 F -0.142 7.142 18 C -0.172 4.172 19 H 0.266 0.734 20 H 0.017 0.983 21 H 0.006 0.994 22 H 0.134 0.866 23 H 0.167 0.833 24 H 0.116 0.884 25 H 0.144 0.856 26 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 -15.295 -2.132 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.016 3.984 10 C -0.024 4.024 11 C -0.154 4.154 12 C -0.079 4.079 13 C -0.153 4.153 14 C -0.135 4.135 15 Br -0.091 7.091 16 C 0.085 3.915 17 F -0.120 7.120 18 C -0.191 4.191 19 H 0.075 0.925 20 H 0.035 0.965 21 H 0.025 0.975 22 H 0.152 0.848 23 H 0.184 0.816 24 H 0.134 0.866 25 H 0.162 0.838 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.991 -15.000 -2.081 19.316 hybrid contribution -0.411 0.995 0.544 1.206 sum 11.580 -14.005 -1.537 18.237 Atomic orbital electron populations 1.70067 1.07540 1.27954 1.51120 1.25860 0.95733 1.02936 0.94536 0.85427 0.78926 0.78947 0.77965 1.19091 1.19974 1.20385 1.21364 0.93104 0.91090 1.51174 0.92719 1.18176 0.92868 0.90686 0.96681 1.20302 0.95367 0.93948 0.92828 1.21262 0.99024 0.97289 0.97855 1.21140 0.94695 0.94402 0.97712 1.19605 1.02178 1.01439 0.92080 1.23513 0.84563 0.95907 1.09478 1.97426 1.22757 1.89328 1.99637 1.17520 0.97410 0.95358 0.81174 1.91441 1.88149 1.85907 1.46549 1.21010 1.00627 0.97863 0.99562 0.92492 0.96516 0.97535 0.84849 0.81566 0.86598 0.83793 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.45 0.28 -54.23 15 2 C 0.01 0.44 5.46 84.66 0.46 0.91 15 3 Si 0.96 43.66 29.54 68.60 2.03 45.69 15 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 7 C -0.53 -29.42 9.09 25.60 0.23 -29.19 15 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 15 9 C 0.05 2.70 5.10 29.10 0.15 2.85 15 10 C -0.02 -0.99 5.07 -19.87 -0.10 -1.09 15 11 C -0.14 -4.66 9.70 22.27 0.22 -4.44 15 12 C -0.06 -1.61 9.70 22.26 0.22 -1.39 15 13 C -0.15 -4.07 5.20 -19.82 -0.10 -4.17 15 14 C -0.02 -0.41 6.56 71.24 0.47 0.06 15 15 Br -0.17 -4.01 33.92 -20.37 -0.69 -4.70 15 16 C 0.11 3.47 7.24 22.37 0.16 3.63 15 17 F -0.14 -4.52 16.48 44.97 0.74 -3.78 15 18 C -0.17 -6.66 9.68 22.31 0.22 -6.44 15 19 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 20 H 0.02 0.89 8.09 -2.38 -0.02 0.87 15 21 H 0.01 0.35 8.09 -2.39 -0.02 0.33 15 22 H 0.13 4.36 8.06 -2.91 -0.02 4.34 15 23 H 0.17 3.05 8.06 -2.91 -0.02 3.03 15 24 H 0.12 2.10 7.64 -2.39 -0.02 2.08 15 25 H 0.14 1.87 8.09 -2.39 -0.02 1.85 15 26 H 0.12 4.84 8.06 -2.91 -0.02 4.82 15 Total: -1.00 -61.59 259.46 5.46 -56.13 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: 1.18 Total: 0.19 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 1.92 Total: -39.29 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.28 Total: -54.23 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.74 Total: -3.78 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 35 Polarization: -4.01 SS G_CDS: -0.69 Total: -4.70 kcal Total: -61.59 5.46 -56.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307607112.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.510 kcal (2) G-P(sol) polarization free energy of solvation -61.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds