Wall clock time and date at job start Mon Mar 30 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00263 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00073 * 3 2 1 7 7 C 1.38811 * 119.99700 * 180.27886 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72367 * 7 2 1 9 9 N 1.36965 * 119.99935 * 359.71878 * 7 2 1 10 10 C 1.37611 * 119.99274 * 179.97438 * 9 7 2 11 11 N 1.30925 * 124.97652 * 359.70178 * 10 9 7 12 12 C 1.35955 * 108.73135 * 179.83329 * 11 10 9 13 13 C 1.39678 * 133.64366 * 180.09215 * 12 11 10 14 14 C 1.37824 * 119.73743 * 180.34259 * 13 12 11 15 15 Cl 1.73600 * 119.80336 * 180.02562 * 14 13 12 16 16 C 1.38783 * 120.38512 * 359.97438 * 14 13 12 17 17 C 1.38107 * 120.45602 * 0.02964 * 16 14 13 18 18 Cl 1.73604 * 120.05201 * 179.97438 * 17 16 14 19 19 C 1.38653 * 119.90001 * 359.97156 * 17 16 14 20 20 O 1.34519 * 124.97003 * 180.02562 * 10 9 7 21 21 H 0.97000 * 119.99731 * 179.97438 * 1 2 3 22 22 H 0.96990 * 120.00237 * 0.02562 * 9 7 2 23 23 H 1.07999 * 120.13066 * 0.35321 * 13 12 11 24 24 H 1.07998 * 119.76920 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7465 0.0006 5 1 3.1033 1.6964 1.2125 6 1 3.1032 1.6964 -1.2125 7 6 2.0095 -1.2022 -0.0059 8 1 3.0895 -1.2021 -0.0104 9 7 1.3246 -2.3883 -0.0058 10 6 2.0128 -3.5800 -0.0121 11 7 3.3170 -3.6934 -0.0241 12 6 3.6404 -5.0139 -0.0233 13 6 4.8515 -5.7099 -0.0311 14 6 4.8479 -7.0881 -0.0348 15 17 6.3521 -7.9548 -0.0438 16 6 3.6489 -7.7870 -0.0303 17 6 2.4446 -7.1110 -0.0227 18 17 0.9510 -7.9959 -0.0179 19 6 2.4303 -5.7246 -0.0189 20 8 1.4437 -4.7989 -0.0132 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3547 -2.3883 -0.0021 23 1 5.7869 -5.1701 -0.0340 24 1 3.6578 -8.8670 -0.0329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308870852.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:22 Heat of formation + Delta-G solvation = 28.304345 kcal Electronic energy + Delta-G solvation = -15554.504683 eV Core-core repulsion = 12521.232361 eV Total energy + Delta-G solvation = -3033.272323 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 271.986 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.40721 -38.09117 -36.62254 -36.36407 -35.85659 -33.60112 -31.95732 -29.97670 -28.44229 -25.20503 -22.74901 -22.39852 -21.20238 -18.66829 -18.15758 -17.27113 -16.46522 -16.23410 -15.24350 -14.77336 -14.45311 -13.95626 -13.68589 -13.35376 -12.67100 -12.33271 -11.86678 -11.82898 -11.52365 -11.18463 -11.06644 -10.91768 -10.83443 -10.42314 -10.28982 -9.93285 -9.48636 -8.96506 -8.26772 -7.43242 -7.28850 -4.28728 1.03852 1.35882 1.94050 2.40321 2.64518 2.93717 3.15848 3.25986 3.34599 3.94065 3.95063 4.19087 4.77103 5.03555 5.20789 5.26651 5.42281 5.71456 6.15196 6.29192 6.40989 6.51835 6.77453 7.11470 7.65805 7.85086 8.16100 8.71829 8.95767 10.11739 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.004980 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.386834 B = 5621.236007 C = 6765.778105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.000 4.000 3 Si 1.099 2.901 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.365 4.365 8 H 0.119 0.881 9 N -0.486 5.486 10 C 0.451 3.549 11 N -0.566 5.566 12 C 0.133 3.867 13 C -0.111 4.111 14 C -0.002 4.002 15 Cl -0.068 7.068 16 C -0.148 4.148 17 C 0.025 3.975 18 Cl -0.067 7.067 19 C -0.024 4.024 20 O -0.245 6.245 21 H 0.267 0.733 22 H 0.400 0.600 23 H 0.140 0.860 24 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -10.820 -0.024 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.206 4.206 3 Si 0.922 3.078 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.493 4.493 8 H 0.137 0.863 9 N -0.108 5.108 10 C 0.152 3.848 11 N -0.311 5.311 12 C 0.011 3.989 13 C -0.135 4.135 14 C -0.030 4.030 15 Cl -0.039 7.039 16 C -0.170 4.170 17 C -0.004 4.004 18 Cl -0.038 7.038 19 C -0.078 4.078 20 O -0.140 6.140 21 H 0.079 0.921 22 H 0.237 0.763 23 H 0.158 0.842 24 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.350 -8.480 -0.030 10.027 hybrid contribution -1.010 -2.509 0.005 2.705 sum 4.340 -10.990 -0.025 11.816 Atomic orbital electron populations 1.70966 1.06624 1.30057 1.42712 1.26960 0.96396 1.02955 0.94334 0.83029 0.74534 0.72482 0.77761 1.19868 1.20255 1.20245 1.20884 0.95332 0.81461 1.51645 0.86308 1.39802 1.07847 0.99404 1.63713 1.21315 0.85388 0.80067 0.97982 1.71135 1.08158 1.13941 1.37861 1.19584 0.92392 0.89614 0.97262 1.19769 0.96710 0.90869 1.06117 1.20106 0.86327 0.91383 1.05211 1.98345 1.31908 1.76610 1.97086 1.20150 0.87813 0.99953 1.09128 1.19156 0.87760 0.85934 1.07501 1.98354 1.32912 1.75547 1.97008 1.19438 0.87753 0.89433 1.11128 1.84377 1.34923 1.14497 1.80173 0.92133 0.76303 0.84171 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.91 13.69 55.49 0.76 -21.15 14 2 C 0.00 0.00 5.50 -17.46 -0.10 -0.10 14 3 Si 1.10 21.23 29.92 -169.99 -5.09 16.15 14 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 14 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 14 6 H -0.28 -5.14 7.11 56.52 0.40 -4.74 14 7 C -0.36 -9.00 9.78 -15.05 -0.15 -9.14 14 8 H 0.12 3.00 7.33 -52.48 -0.38 2.62 14 9 N -0.49 -11.39 5.39 -12.90 -0.07 -11.46 14 10 C 0.45 10.47 8.91 -87.63 -0.78 9.69 14 11 N -0.57 -13.23 10.56 -12.11 -0.13 -13.36 14 12 C 0.13 2.74 7.23 -84.71 -0.61 2.13 14 13 C -0.11 -1.90 9.87 -39.20 -0.39 -2.29 14 14 C 0.00 -0.03 6.31 -39.53 -0.25 -0.28 14 15 Cl -0.07 -0.85 28.94 -51.86 -1.50 -2.35 14 16 C -0.15 -2.17 9.59 -39.43 -0.38 -2.55 14 17 C 0.02 0.42 6.32 -39.48 -0.25 0.17 14 18 Cl -0.07 -1.01 28.96 -51.86 -1.50 -2.51 14 19 C -0.02 -0.48 7.21 -38.64 -0.28 -0.76 14 20 O -0.24 -5.31 10.79 2.32 0.03 -5.29 14 21 H 0.27 6.51 6.77 -40.82 -0.28 6.23 14 22 H 0.40 8.79 6.84 -40.82 -0.28 8.51 14 23 H 0.14 2.19 8.06 -52.49 -0.42 1.77 14 24 H 0.14 1.74 8.06 -52.49 -0.42 1.32 14 LS Contribution 257.35 15.07 3.88 3.88 Total: -1.00 -25.79 257.35 -7.38 -33.17 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -0.58 Total: 6.06 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -3.18 Total: -3.14 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.56 Total: -45.97 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: 0.03 Total: -5.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.09 Total: 16.15 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -3.00 Total: -4.87 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.79 -7.38 -33.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308870852.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.475 kcal (2) G-P(sol) polarization free energy of solvation -25.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds