Wall clock time and date at job start Mon Mar 30 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00263 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00073 * 3 2 1 7 7 C 1.38811 * 119.99700 * 180.27886 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72367 * 7 2 1 9 9 N 1.36965 * 119.99935 * 359.71878 * 7 2 1 10 10 C 1.37611 * 119.99274 * 179.97438 * 9 7 2 11 11 N 1.30925 * 124.97652 * 359.70178 * 10 9 7 12 12 C 1.35955 * 108.73135 * 179.83329 * 11 10 9 13 13 C 1.39678 * 133.64366 * 180.09215 * 12 11 10 14 14 C 1.37824 * 119.73743 * 180.34259 * 13 12 11 15 15 Cl 1.73600 * 119.80336 * 180.02562 * 14 13 12 16 16 C 1.38783 * 120.38512 * 359.97438 * 14 13 12 17 17 C 1.38107 * 120.45602 * 0.02964 * 16 14 13 18 18 Cl 1.73604 * 120.05201 * 179.97438 * 17 16 14 19 19 C 1.38653 * 119.90001 * 359.97156 * 17 16 14 20 20 O 1.34519 * 124.97003 * 180.02562 * 10 9 7 21 21 H 0.97000 * 119.99731 * 179.97438 * 1 2 3 22 22 H 0.96990 * 120.00237 * 0.02562 * 9 7 2 23 23 H 1.07999 * 120.13066 * 0.35321 * 13 12 11 24 24 H 1.07998 * 119.76920 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7465 0.0006 5 1 3.1033 1.6964 1.2125 6 1 3.1032 1.6964 -1.2125 7 6 2.0095 -1.2022 -0.0059 8 1 3.0895 -1.2021 -0.0104 9 7 1.3246 -2.3883 -0.0058 10 6 2.0128 -3.5800 -0.0121 11 7 3.3170 -3.6934 -0.0241 12 6 3.6404 -5.0139 -0.0233 13 6 4.8515 -5.7099 -0.0311 14 6 4.8479 -7.0881 -0.0348 15 17 6.3521 -7.9548 -0.0438 16 6 3.6489 -7.7870 -0.0303 17 6 2.4446 -7.1110 -0.0227 18 17 0.9510 -7.9959 -0.0179 19 6 2.4303 -5.7246 -0.0189 20 8 1.4437 -4.7989 -0.0132 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3547 -2.3883 -0.0021 23 1 5.7869 -5.1701 -0.0340 24 1 3.6578 -8.8670 -0.0329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308870852.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:22 Heat of formation + Delta-G solvation = 12.456032 kcal Electronic energy + Delta-G solvation = -15555.191918 eV Core-core repulsion = 12521.232361 eV Total energy + Delta-G solvation = -3033.959557 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 271.986 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.04696 -39.51164 -38.08089 -37.81706 -37.17437 -35.24348 -33.66632 -31.39607 -29.97223 -26.97108 -24.26084 -23.92167 -22.82985 -20.32963 -19.81589 -18.82045 -17.91079 -17.88202 -16.90447 -16.31831 -15.81539 -15.48064 -15.20099 -14.71019 -13.98027 -13.78047 -13.66917 -13.30492 -12.91934 -12.69978 -12.35969 -12.33755 -12.00741 -11.99118 -11.89296 -11.37788 -11.18169 -10.61656 -9.64543 -9.12230 -9.05765 -6.15972 -0.38572 -0.08260 0.65545 0.97716 1.14405 1.35177 1.59750 1.73949 1.86119 2.38977 2.42188 2.59337 2.98380 3.52721 3.77044 3.92588 4.02541 4.20614 4.69296 4.87610 4.94637 5.07143 5.24816 5.35143 5.83453 6.08672 6.45285 6.95410 7.24311 8.32097 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.004980 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.386834 B = 5621.236007 C = 6765.778105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.034 4.034 3 Si 1.142 2.858 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.385 4.385 8 H 0.105 0.895 9 N -0.507 5.507 10 C 0.454 3.546 11 N -0.590 5.590 12 C 0.096 3.904 13 C -0.100 4.100 14 C 0.002 3.998 15 Cl -0.033 7.033 16 C -0.116 4.116 17 C 0.018 3.982 18 Cl -0.048 7.048 19 C -0.045 4.045 20 O -0.250 6.250 21 H 0.260 0.740 22 H 0.401 0.599 23 H 0.154 0.846 24 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.048 -13.359 -0.036 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.234 4.234 3 Si 0.959 3.041 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.513 4.513 8 H 0.123 0.877 9 N -0.133 5.133 10 C 0.155 3.845 11 N -0.337 5.337 12 C -0.022 4.022 13 C -0.123 4.123 14 C -0.027 4.027 15 Cl -0.004 7.004 16 C -0.137 4.137 17 C -0.010 4.010 18 Cl -0.019 7.019 19 C -0.098 4.098 20 O -0.144 6.144 21 H 0.071 0.929 22 H 0.239 0.761 23 H 0.171 0.829 24 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.206 -11.133 -0.042 13.261 hybrid contribution -1.337 -2.275 0.006 2.639 sum 5.869 -13.408 -0.036 14.637 Atomic orbital electron populations 1.71027 1.07318 1.29710 1.45658 1.28176 0.96465 1.05337 0.93406 0.82544 0.73758 0.69222 0.78569 1.20027 1.19042 1.19054 1.20836 0.94825 0.82329 1.53287 0.87707 1.39688 1.07785 0.99234 1.66615 1.21505 0.85660 0.80492 0.96853 1.71061 1.08403 1.16063 1.38171 1.19900 0.93962 0.88853 0.99482 1.20052 0.96087 0.91892 1.04233 1.20210 0.88023 0.90846 1.03588 1.98373 1.29706 1.75563 1.96790 1.20673 0.86660 1.01654 1.04678 1.19410 0.89437 0.85002 1.07164 1.98366 1.31955 1.74664 1.96878 1.19879 0.87187 0.90414 1.12288 1.84353 1.35708 1.14423 1.79960 0.92863 0.76136 0.82853 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.21 13.69 21.65 0.30 -46.92 14 2 C -0.03 -1.67 5.50 84.87 0.47 -1.20 14 3 Si 1.14 43.63 29.92 68.60 2.05 45.68 14 4 H -0.28 -10.47 7.11 99.48 0.71 -9.76 14 5 H -0.27 -9.52 7.11 99.48 0.71 -8.82 14 6 H -0.27 -9.54 7.11 99.48 0.71 -8.83 14 7 C -0.38 -19.82 9.78 84.03 0.82 -19.00 14 8 H 0.11 5.54 7.33 -2.91 -0.02 5.52 14 9 N -0.51 -24.99 5.39 -305.34 -1.65 -26.64 14 10 C 0.45 21.81 8.91 179.30 1.60 23.40 14 11 N -0.59 -28.16 10.56 -306.38 -3.23 -31.39 14 12 C 0.10 3.90 7.23 39.36 0.28 4.18 14 13 C -0.10 -3.19 9.87 22.52 0.22 -2.97 14 14 C 0.00 0.04 6.31 22.30 0.14 0.19 14 15 Cl -0.03 -0.69 28.94 -2.72 -0.08 -0.77 14 16 C -0.12 -2.89 9.59 22.37 0.21 -2.68 14 17 C 0.02 0.56 6.32 22.34 0.14 0.70 14 18 Cl -0.05 -1.31 28.96 -2.72 -0.08 -1.39 14 19 C -0.05 -1.77 7.21 22.88 0.16 -1.60 14 20 O -0.25 -11.03 10.79 -14.61 -0.16 -11.19 14 21 H 0.26 13.40 6.77 -92.71 -0.63 12.78 14 22 H 0.40 18.82 6.84 -92.72 -0.63 18.18 14 23 H 0.15 4.44 8.06 -2.91 -0.02 4.41 14 24 H 0.18 3.28 8.06 -2.91 -0.02 3.26 14 Total: -1.00 -56.85 257.35 2.00 -54.85 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.79 Total: 16.74 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 4.05 Total: 1.02 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.58 Total: -104.95 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.16 Total: -11.19 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.05 Total: 45.68 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.16 Total: -2.16 kcal Total: -56.85 2.00 -54.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308870852.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.310 kcal (2) G-P(sol) polarization free energy of solvation -56.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds