Wall clock time and date at job start Mon Mar 30 2020 07:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29497 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47133 * 239.99774 * 3 2 1 5 5 H 1.48499 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46982 * 120.00170 * 3 2 1 7 7 C 1.46539 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 171.62445 * 7 2 1 9 9 C 1.40340 * 120.00244 * 351.62903 * 7 2 1 10 10 C 1.41273 * 120.28090 * 325.31107 * 9 7 2 11 11 C 1.36587 * 119.67992 * 180.02562 * 10 9 7 12 12 Cl 1.73611 * 119.86238 * 180.02562 * 11 10 9 13 13 C 1.38939 * 120.27618 * 359.72835 * 11 10 9 14 14 N 1.48023 * 119.71016 * 180.29466 * 13 11 10 15 15 O 1.21792 * 120.00138 * 180.25833 * 14 13 11 16 16 O 1.21800 * 119.99878 * 0.25901 * 14 13 11 17 17 C 1.38756 * 120.58322 * 0.55624 * 13 11 10 18 18 C 1.36528 * 120.30734 * 359.44412 * 17 13 11 19 19 N 1.48021 * 120.13862 * 180.29988 * 18 17 13 20 20 O 1.31700 * 119.99987 * 353.84223 * 19 18 17 21 21 O 1.31703 * 119.99937 * 173.84127 * 19 18 17 22 22 H 0.97001 * 120.00142 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.15896 * 0.02562 * 10 9 7 24 24 H 1.07995 * 119.84164 * 179.71887 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6178 0.0000 4 1 3.0828 1.6965 -1.2125 5 1 1.2639 2.7465 -0.0006 6 1 3.0827 1.6964 1.2125 7 6 2.0277 -1.2691 -0.0006 8 1 3.0991 -1.2739 -0.1368 9 6 1.3373 -2.4781 0.1758 10 6 0.2102 -2.5374 1.0256 11 6 -0.4523 -3.7206 1.1887 12 17 -1.8383 -3.7987 2.2313 13 6 -0.0253 -4.8606 0.5190 14 7 -0.7565 -6.1349 0.6999 15 8 -0.3841 -7.1385 0.1191 16 8 -1.7307 -6.1797 1.4296 17 6 1.0837 -4.8165 -0.3137 18 6 1.7637 -3.6464 -0.4942 19 7 2.9423 -3.6020 -1.3885 20 8 3.4105 -4.7140 -1.9165 21 8 3.5227 -2.4505 -1.6563 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1259 -1.6514 1.5436 24 1 1.4078 -5.7108 -0.8249 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309242846.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:40 Heat of formation + Delta-G solvation = 19.671569 kcal Electronic energy + Delta-G solvation = -18328.127334 eV Core-core repulsion = 14853.771501 eV Total energy + Delta-G solvation = -3474.355832 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 272.008 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.29804 -39.18136 -37.23380 -36.06507 -35.64745 -35.01033 -33.33512 -31.54408 -30.84522 -27.80711 -25.81281 -24.25436 -22.21665 -21.30522 -19.02010 -18.65428 -17.96106 -16.99260 -16.74538 -16.44685 -16.33139 -15.05113 -14.99374 -14.72479 -13.77200 -13.28266 -13.05196 -12.51125 -12.05871 -11.95769 -11.63996 -11.34493 -11.15032 -11.01723 -10.61322 -10.38932 -10.35240 -10.20068 -9.90979 -9.72043 -9.62901 -8.93323 -8.79550 -8.21947 -5.89435 0.31118 0.77200 1.99232 2.01907 2.06578 2.29880 2.40547 2.50615 2.53812 2.74841 3.10169 3.32898 4.08721 4.97773 5.34457 5.37242 5.59988 5.76056 5.96902 6.05018 6.37244 6.56633 6.74352 7.04570 7.14910 7.27811 7.36257 7.94556 8.53025 8.62399 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.008213 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.205689 B = 3408.210037 C = 4838.394799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.044 3.956 3 Si 0.947 3.053 4 H -0.242 1.242 5 H -0.263 1.263 6 H -0.246 1.246 7 C -0.266 4.266 8 H 0.142 0.858 9 C 0.076 3.924 10 C -0.101 4.101 11 C 0.021 3.979 12 Cl -0.046 7.046 13 C -0.162 4.162 14 N 0.063 4.937 15 O -0.221 6.221 16 O -0.182 6.182 17 C 0.076 3.924 18 C -0.101 4.101 19 N 0.032 4.968 20 O -0.285 6.285 21 O -0.226 6.226 22 H 0.318 0.682 23 H 0.154 0.846 24 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 5.962 3.458 6.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.191 4.191 3 Si 0.765 3.235 4 H -0.165 1.165 5 H -0.187 1.187 6 H -0.169 1.169 7 C -0.290 4.290 8 H 0.159 0.841 9 C 0.069 3.931 10 C -0.121 4.121 11 C -0.008 4.008 12 Cl -0.017 7.017 13 C -0.252 4.252 14 N 0.568 4.432 15 O -0.421 6.421 16 O -0.393 6.393 17 C 0.055 3.945 18 C -0.198 4.198 19 N 0.475 4.525 20 O -0.447 6.447 21 O -0.402 6.402 22 H 0.132 0.868 23 H 0.171 0.829 24 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.466 6.445 3.648 7.550 hybrid contribution 0.089 0.187 -0.202 0.289 sum -1.376 6.632 3.446 7.600 Atomic orbital electron populations 1.69003 1.09417 1.34355 1.17868 1.28251 0.95326 1.03981 0.91548 0.85633 0.80262 0.75199 0.82370 1.16476 1.18728 1.16913 1.22751 0.98351 0.88398 1.19514 0.84096 1.17144 0.92634 0.91289 0.91990 1.21000 0.96005 0.95405 0.99738 1.19954 0.92028 0.93236 0.95595 1.98370 1.39938 1.98598 1.64782 1.19719 1.03858 0.84549 1.17105 1.43134 0.99782 1.02081 0.98249 1.94453 1.72482 1.25255 1.49953 1.94506 1.17352 1.92070 1.35357 1.19860 0.88030 0.97615 0.88989 1.19470 0.95946 0.97111 1.07301 1.49756 1.01324 1.01789 0.99643 1.96182 1.70530 1.18863 1.59116 1.96107 1.61537 1.12851 1.69709 0.86805 0.82855 0.82560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -11.94 11.29 55.98 0.63 -11.31 14 2 C 0.04 0.75 5.43 -15.19 -0.08 0.67 14 3 Si 0.95 12.63 29.65 -169.99 -5.04 7.59 14 4 H -0.24 -3.39 7.11 56.52 0.40 -2.99 14 5 H -0.26 -3.31 7.11 56.52 0.40 -2.91 14 6 H -0.25 -3.22 7.11 56.52 0.40 -2.82 14 7 C -0.27 -5.24 7.87 -35.45 -0.28 -5.52 14 8 H 0.14 2.77 5.87 -52.48 -0.31 2.47 14 9 C 0.08 1.59 5.52 -106.80 -0.59 1.00 14 10 C -0.10 -2.00 8.42 -39.03 -0.33 -2.33 14 11 C 0.02 0.42 6.28 -39.92 -0.25 0.17 14 12 Cl -0.05 -0.85 25.88 -51.86 -1.34 -2.19 14 13 C -0.16 -3.47 6.88 -79.49 -0.55 -4.01 14 14 N 0.06 1.40 4.45 34.18 0.15 1.55 14 15 O -0.22 -4.91 18.42 -29.46 -0.54 -5.45 14 16 O -0.18 -3.96 15.97 -29.46 -0.47 -4.43 14 17 C 0.08 1.64 9.03 -40.01 -0.36 1.27 14 18 C -0.10 -2.24 6.90 -79.41 -0.55 -2.79 14 19 N 0.03 0.75 4.98 34.22 0.17 0.92 14 20 O -0.29 -6.94 19.15 -31.57 -0.60 -7.54 14 21 O -0.23 -5.30 16.26 -31.57 -0.51 -5.82 14 22 H 0.32 4.67 8.27 -40.82 -0.34 4.33 14 23 H 0.15 2.86 6.66 -52.49 -0.35 2.51 14 24 H 0.16 3.25 7.09 -52.49 -0.37 2.88 14 LS Contribution 251.62 15.07 3.79 3.79 Total: -1.00 -24.04 251.62 -6.92 -30.96 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -0.16 Total: 3.46 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.99 Total: -11.53 kcal Atomic # 7 Polarization: -9.80 SS G_CDS: 0.96 Total: -8.84 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -2.13 Total: -23.24 kcal Atomic # 14 Polarization: 12.63 SS G_CDS: -5.04 Total: 7.59 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.34 Total: -2.19 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -24.04 -6.92 -30.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309242846.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.627 kcal (2) G-P(sol) polarization free energy of solvation -24.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds