Wall clock time and date at job start Mon Mar 30 2020 07:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29497 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47133 * 239.99774 * 3 2 1 5 5 H 1.48499 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46982 * 120.00170 * 3 2 1 7 7 C 1.46539 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 171.62445 * 7 2 1 9 9 C 1.40340 * 120.00244 * 351.62903 * 7 2 1 10 10 C 1.41273 * 120.28090 * 325.31107 * 9 7 2 11 11 C 1.36587 * 119.67992 * 180.02562 * 10 9 7 12 12 Cl 1.73611 * 119.86238 * 180.02562 * 11 10 9 13 13 C 1.38939 * 120.27618 * 359.72835 * 11 10 9 14 14 N 1.48023 * 119.71016 * 180.29466 * 13 11 10 15 15 O 1.21792 * 120.00138 * 180.25833 * 14 13 11 16 16 O 1.21800 * 119.99878 * 0.25901 * 14 13 11 17 17 C 1.38756 * 120.58322 * 0.55624 * 13 11 10 18 18 C 1.36528 * 120.30734 * 359.44412 * 17 13 11 19 19 N 1.48021 * 120.13862 * 180.29988 * 18 17 13 20 20 O 1.31700 * 119.99987 * 353.84223 * 19 18 17 21 21 O 1.31703 * 119.99937 * 173.84127 * 19 18 17 22 22 H 0.97001 * 120.00142 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.15896 * 0.02562 * 10 9 7 24 24 H 1.07995 * 119.84164 * 179.71887 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2950 0.0000 0.0000 3 14 2.2290 1.6178 0.0000 4 1 3.0828 1.6965 -1.2125 5 1 1.2639 2.7465 -0.0006 6 1 3.0827 1.6964 1.2125 7 6 2.0277 -1.2691 -0.0006 8 1 3.0991 -1.2739 -0.1368 9 6 1.3373 -2.4781 0.1758 10 6 0.2102 -2.5374 1.0256 11 6 -0.4523 -3.7206 1.1887 12 17 -1.8383 -3.7987 2.2313 13 6 -0.0253 -4.8606 0.5190 14 7 -0.7565 -6.1349 0.6999 15 8 -0.3841 -7.1385 0.1191 16 8 -1.7307 -6.1797 1.4296 17 6 1.0837 -4.8165 -0.3137 18 6 1.7637 -3.6464 -0.4942 19 7 2.9423 -3.6020 -1.3885 20 8 3.4105 -4.7140 -1.9165 21 8 3.5227 -2.4505 -1.6563 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1259 -1.6514 1.5436 24 1 1.4078 -5.7108 -0.8249 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309242846.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:40 Heat of formation + Delta-G solvation = 9.011712 kcal Electronic energy + Delta-G solvation = -18328.589580 eV Core-core repulsion = 14853.771501 eV Total energy + Delta-G solvation = -3474.818079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 272.008 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.03542 -40.83857 -38.90998 -37.65010 -37.33057 -36.53044 -35.06275 -33.17160 -32.48226 -29.45532 -27.55862 -25.87840 -23.84203 -22.98855 -20.63815 -20.28942 -19.69519 -18.73404 -18.49142 -18.01796 -17.88285 -16.71746 -16.49737 -16.34935 -15.31051 -14.64788 -14.59318 -13.98724 -13.56768 -13.26456 -13.22758 -12.97585 -12.68681 -12.33936 -12.13492 -12.07604 -11.97204 -11.75764 -11.54247 -11.48529 -11.24889 -10.56626 -10.40544 -9.60798 -7.51533 -1.48787 -0.84885 0.29813 0.36394 0.42385 0.67529 1.11999 1.27204 1.33811 1.52399 1.95885 2.03953 2.50938 3.34539 3.68239 3.72920 4.10784 4.16488 4.30865 4.43795 4.75250 4.98041 5.09072 5.38929 5.53310 5.65659 5.72222 6.19938 6.78680 7.28935 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.008213 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.205689 B = 3408.210037 C = 4838.394799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.015 3.985 3 Si 1.008 2.992 4 H -0.254 1.254 5 H -0.242 1.242 6 H -0.239 1.239 7 C -0.230 4.230 8 H 0.141 0.859 9 C 0.031 3.969 10 C -0.074 4.074 11 C -0.004 4.004 12 Cl -0.029 7.029 13 C -0.157 4.157 14 N 0.061 4.939 15 O -0.239 6.239 16 O -0.172 6.172 17 C 0.075 3.925 18 C -0.104 4.104 19 N 0.034 4.966 20 O -0.342 6.342 21 O -0.250 6.250 22 H 0.338 0.662 23 H 0.169 0.831 24 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 8.726 4.590 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.219 4.219 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.165 1.165 6 H -0.161 1.161 7 C -0.254 4.254 8 H 0.158 0.842 9 C 0.025 3.975 10 C -0.095 4.095 11 C -0.033 4.033 12 Cl 0.000 7.000 13 C -0.248 4.248 14 N 0.563 4.437 15 O -0.435 6.435 16 O -0.386 6.386 17 C 0.054 3.946 18 C -0.205 4.205 19 N 0.461 4.539 20 O -0.489 6.489 21 O -0.419 6.419 22 H 0.154 0.846 23 H 0.186 0.814 24 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.313 9.108 4.687 10.501 hybrid contribution 0.163 -0.399 -0.394 0.584 sum -2.151 8.708 4.294 9.945 Atomic orbital electron populations 1.68926 1.10268 1.36686 1.15081 1.29021 0.96035 1.05342 0.91468 0.84782 0.79276 0.71734 0.81919 1.17784 1.16519 1.16145 1.23286 0.98666 0.89449 1.14008 0.84204 1.17366 0.94342 0.91531 0.94283 1.21093 0.94460 0.95534 0.98368 1.19949 0.93395 0.92962 0.96970 1.98367 1.38882 1.98570 1.64180 1.19871 1.03546 0.84582 1.16836 1.43238 0.99871 1.02274 0.98270 1.94457 1.72850 1.25589 1.50560 1.94480 1.17141 1.92059 1.34904 1.19884 0.88132 0.97587 0.89031 1.19657 0.95512 0.97827 1.07537 1.49802 1.02033 1.01458 1.00618 1.96155 1.71976 1.19165 1.61575 1.96045 1.62035 1.12914 1.70872 0.84609 0.81408 0.82790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -21.40 11.29 23.21 0.26 -21.14 14 2 C 0.02 0.47 5.43 87.20 0.47 0.95 14 3 Si 1.01 22.29 29.65 68.60 2.03 24.32 14 4 H -0.25 -6.19 7.11 99.48 0.71 -5.48 14 5 H -0.24 -4.62 7.11 99.48 0.71 -3.92 14 6 H -0.24 -5.06 7.11 99.48 0.71 -4.35 14 7 C -0.23 -8.60 7.87 24.95 0.20 -8.40 14 8 H 0.14 5.31 5.87 -2.91 -0.02 5.29 14 9 C 0.03 1.27 5.52 -21.28 -0.12 1.15 14 10 C -0.07 -2.79 8.42 22.63 0.19 -2.60 14 11 C 0.00 -0.15 6.28 22.05 0.14 -0.01 14 12 Cl -0.03 -1.02 25.88 -2.72 -0.07 -1.09 14 13 C -0.16 -6.68 6.88 36.67 0.25 -6.43 14 14 N 0.06 2.65 4.45 -45.76 -0.20 2.45 14 15 O -0.24 -10.65 18.42 18.90 0.35 -10.31 14 16 O -0.17 -7.28 15.97 18.89 0.30 -6.98 14 17 C 0.07 3.27 9.03 21.99 0.20 3.47 14 18 C -0.10 -4.70 6.90 36.72 0.25 -4.44 14 19 N 0.03 1.65 4.98 -45.64 -0.23 1.42 14 20 O -0.34 -17.54 19.15 3.51 0.07 -17.47 14 21 O -0.25 -11.92 16.26 3.51 0.06 -11.87 14 22 H 0.34 8.43 8.27 -92.71 -0.77 7.66 14 23 H 0.17 5.75 6.66 -2.91 -0.02 5.73 14 24 H 0.15 6.68 7.09 -2.91 -0.02 6.66 14 Total: -1.00 -50.85 251.62 5.45 -45.39 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.30 Total: 11.59 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 1.59 Total: -16.32 kcal Atomic # 7 Polarization: -17.11 SS G_CDS: -0.17 Total: -17.27 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: 0.77 Total: -46.63 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: 2.03 Total: 24.32 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.09 kcal Total: -50.85 5.45 -45.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309242846.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.405 kcal (2) G-P(sol) polarization free energy of solvation -50.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds