Wall clock time and date at job start Mon Mar 30 2020 07:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47499 * 2 1 4 4 Cl 1.80302 * 109.46960 * 240.00493 * 2 1 3 5 5 C 1.50700 * 109.47169 * 120.01025 * 2 1 3 6 6 O 1.21341 * 120.00415 * 94.99652 * 5 2 1 7 7 C 1.46548 * 119.99421 * 274.99549 * 5 2 1 8 8 C 1.39722 * 120.57658 * 5.47393 * 7 5 2 9 9 C 1.37956 * 120.03568 * 180.26836 * 8 7 5 10 10 C 1.38857 * 121.29113 * 359.44994 * 9 8 7 11 11 Cl 1.73600 * 119.40066 * 180.25154 * 10 9 8 12 12 C 1.37675 * 121.20102 * 0.27892 * 10 9 8 13 13 C 1.40773 * 119.84355 * 359.97438 * 12 10 9 14 14 C 1.40749 * 120.60927 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00055 * 212.30112 * 14 13 12 16 16 C 1.40386 * 119.99695 * 32.30825 * 14 13 12 17 17 N 1.30564 * 120.00028 * 9.18703 * 16 14 13 18 18 Si 1.86796 * 119.99643 * 189.18322 * 16 14 13 19 19 H 1.48498 * 109.47519 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46906 * 119.99864 * 18 16 14 21 21 H 1.48503 * 109.47383 * 239.99908 * 18 16 14 22 22 H 1.09005 * 109.46999 * 299.99768 * 1 2 3 23 23 H 1.09002 * 109.47576 * 59.99640 * 1 2 3 24 24 H 1.08996 * 109.47575 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.98154 * 0.02562 * 8 7 5 26 26 H 1.07995 * 119.35515 * 179.72409 * 9 8 7 27 27 H 1.08000 * 120.08086 * 180.02562 * 12 10 9 28 28 H 0.97006 * 119.99462 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 17 2.1309 -0.8498 -1.4722 5 6 2.0323 -0.7106 1.2303 6 8 2.3208 -1.8880 1.1757 7 6 2.1723 0.0204 2.4927 8 6 1.7376 1.3439 2.5996 9 6 1.8799 2.0233 3.7918 10 6 2.4412 1.4144 4.9064 11 17 2.5906 2.3133 6.3840 12 6 2.8819 0.1109 4.8608 13 6 2.7653 -0.6267 3.6675 14 6 3.2110 -1.9602 3.6028 15 1 3.6102 -2.3519 2.6789 16 6 3.1365 -2.7811 4.7392 17 7 2.4940 -2.3715 5.7994 18 14 3.9565 -4.4594 4.7342 19 1 4.6149 -4.6849 3.4224 20 1 4.9739 -4.5164 5.8144 21 1 2.9331 -5.5111 4.9622 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.2935 1.8367 1.7473 26 1 1.5441 3.0475 3.8609 27 1 3.3152 -0.3450 5.7388 28 1 2.4429 -2.9386 6.5848 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396099236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:02 Heat of formation + Delta-G solvation = -61.059321 kcal Electronic energy + Delta-G solvation = -16249.974910 eV Core-core repulsion = 13316.367832 eV Total energy + Delta-G solvation = -2933.607078 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.011 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45727 -38.66773 -37.10782 -36.85935 -35.77726 -33.68359 -31.71410 -31.06063 -27.73628 -25.71331 -23.58145 -22.80603 -20.28323 -19.52818 -17.59661 -17.29956 -16.60057 -16.32066 -15.72797 -15.50111 -15.16645 -14.66431 -14.25979 -14.02811 -13.50713 -13.36564 -13.22137 -13.06043 -12.94210 -12.60364 -12.54395 -12.14552 -12.04584 -11.85839 -11.73766 -11.45263 -11.34365 -11.22069 -10.09383 -9.48344 -9.27330 -8.84664 -6.55722 0.06286 0.88101 1.15528 1.33188 1.42397 1.46356 1.48402 1.85302 2.13357 2.60053 3.18245 3.46438 3.96700 4.02188 4.27455 4.51841 4.67432 4.73783 4.84653 4.96305 5.00842 5.10877 5.16895 5.30320 5.64139 5.80146 5.87603 6.05362 6.45845 6.64605 6.72668 7.06272 8.08434 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.008578 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.813610 B = 3263.353954 C = 5170.846398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 H 0.144 0.856 4 Cl -0.179 7.179 5 C 0.383 3.617 6 O -0.487 6.487 7 C -0.314 4.314 8 C -0.018 4.018 9 C -0.247 4.247 10 C 0.011 3.989 11 Cl -0.098 7.098 12 C -0.174 4.174 13 C 0.121 3.879 14 C -0.432 4.432 15 H 0.091 0.909 16 C 0.033 3.967 17 N -0.797 5.797 18 Si 0.981 3.019 19 H -0.265 1.265 20 H -0.254 1.254 21 H -0.262 1.262 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.055 0.945 25 H 0.153 0.847 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 5.838 -4.784 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 H 0.162 0.838 4 Cl -0.152 7.152 5 C 0.266 3.734 6 O -0.367 6.367 7 C -0.317 4.317 8 C -0.036 4.036 9 C -0.266 4.266 10 C -0.016 4.016 11 Cl -0.070 7.070 12 C -0.194 4.194 13 C 0.117 3.883 14 C -0.459 4.459 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.421 5.421 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.178 1.178 21 H -0.187 1.187 22 H 0.109 0.891 23 H 0.121 0.879 24 H 0.074 0.926 25 H 0.171 0.829 26 H 0.153 0.847 27 H 0.130 0.870 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.605 5.187 -4.554 7.378 hybrid contribution 0.399 -0.737 0.495 0.974 sum -2.206 4.449 -4.059 6.414 Atomic orbital electron populations 1.22035 0.88995 1.03771 1.05384 1.24718 0.99856 0.99567 0.84033 0.83805 1.98704 1.90482 1.82521 1.43539 1.22158 0.74759 0.87876 0.88614 1.90487 1.41381 1.18546 1.86327 1.21163 1.16483 0.97710 0.96325 1.21174 0.93776 0.91668 0.96956 1.20462 1.12297 1.01428 0.92443 1.21060 1.01157 0.92236 0.87101 1.98275 1.96769 1.75349 1.36590 1.21183 1.06589 0.92005 0.99654 1.18842 0.86729 0.92742 0.90010 1.20310 1.31881 0.95864 0.97858 0.89074 1.26949 0.93406 1.04734 0.93452 1.69691 1.29123 1.39215 1.04110 0.85154 0.79011 0.76035 0.79685 1.18854 1.17775 1.18701 0.89087 0.87899 0.92605 0.82935 0.84720 0.87002 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.23 71.98 0.66 -2.77 15 2 C -0.04 -1.11 2.95 29.85 0.09 -1.02 15 3 H 0.14 3.39 7.00 -2.39 -0.02 3.38 15 4 Cl -0.18 -5.67 28.00 -2.72 -0.08 -5.74 15 5 C 0.38 15.78 6.23 27.85 0.17 15.95 15 6 O -0.49 -23.99 13.68 -3.22 -0.04 -24.03 15 7 C -0.31 -13.69 6.06 -18.56 -0.11 -13.80 15 8 C -0.02 -0.62 9.09 22.56 0.21 -0.41 15 9 C -0.25 -9.07 9.74 22.35 0.22 -8.85 15 10 C 0.01 0.48 6.30 22.28 0.14 0.62 15 11 Cl -0.10 -3.61 28.91 -2.72 -0.08 -3.68 15 12 C -0.17 -8.51 8.40 22.76 0.19 -8.32 15 13 C 0.12 6.16 5.68 -19.85 -0.11 6.05 15 14 C -0.43 -22.91 7.87 23.41 0.18 -22.73 15 15 H 0.09 5.05 5.95 -2.91 -0.02 5.03 15 16 C 0.03 1.64 5.27 85.40 0.45 2.09 15 17 N -0.80 -39.52 11.02 21.90 0.24 -39.28 15 18 Si 0.98 38.37 29.57 68.60 2.03 40.40 15 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 20 H -0.25 -9.18 7.11 99.48 0.71 -8.48 15 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 22 H 0.09 2.00 7.53 -2.38 -0.02 1.98 15 23 H 0.10 1.79 8.14 -2.39 -0.02 1.78 15 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.15 3.85 6.22 -2.91 -0.02 3.83 15 26 H 0.13 4.12 8.06 -2.91 -0.02 4.09 15 27 H 0.11 5.79 6.47 -2.91 -0.02 5.77 15 28 H 0.30 13.18 8.29 -92.70 -0.77 12.42 15 Total: -1.00 -58.77 275.14 5.36 -53.41 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.20 Total: 12.12 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 2.09 Total: -33.20 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.24 Total: -39.28 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.04 Total: -24.03 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Atomic # 17 Polarization: -9.27 SS G_CDS: -0.15 Total: -9.43 kcal Total: -58.77 5.36 -53.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396099236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.654 kcal (2) G-P(sol) polarization free energy of solvation -58.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds