Wall clock time and date at job start Mon Mar 30 2020 07:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47417 * 2 1 4 4 Cl 1.80301 * 109.47101 * 120.00486 * 2 1 3 5 5 C 1.50700 * 109.47066 * 240.00141 * 2 1 3 6 6 O 1.21256 * 120.00100 * 103.28769 * 5 2 1 7 7 C 1.47153 * 120.00330 * 283.28366 * 5 2 1 8 8 C 1.40241 * 120.02982 * 6.55291 * 7 5 2 9 9 C 1.38136 * 120.34982 * 180.02562 * 8 7 5 10 10 C 1.38007 * 120.43126 * 0.02562 * 9 8 7 11 11 Cl 1.73599 * 119.96906 * 179.97438 * 10 9 8 12 12 C 1.40937 * 120.06281 * 359.97438 * 10 9 8 13 13 C 1.41396 * 120.17797 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00447 * 27.23418 * 13 12 10 15 15 C 1.39929 * 119.99911 * 207.24331 * 13 12 10 16 16 N 1.30843 * 119.99928 * 12.08267 * 15 13 12 17 17 Si 1.86800 * 120.00266 * 192.08375 * 15 13 12 18 18 H 1.48498 * 109.47206 * 59.99617 * 17 15 13 19 19 H 1.48492 * 109.47410 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47078 * 300.00189 * 17 15 13 21 21 C 1.39301 * 120.03796 * 186.56919 * 7 5 2 22 22 H 1.08995 * 109.47251 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46919 * 299.99803 * 1 2 3 24 24 H 1.09002 * 109.47078 * 59.99877 * 1 2 3 25 25 H 1.08000 * 119.82636 * 359.74478 * 8 7 5 26 26 H 1.08002 * 119.78076 * 180.02562 * 9 8 7 27 27 H 0.97001 * 120.00054 * 184.98301 * 16 15 13 28 28 H 1.07994 * 120.21169 * 359.96098 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 17 2.1310 -0.8501 1.4721 5 6 2.0323 -0.7104 -1.2305 6 8 2.4619 -0.0709 -2.1668 7 6 2.0015 -2.1801 -1.2957 8 6 1.3808 -2.9151 -0.2753 9 6 1.3485 -4.2950 -0.3296 10 6 1.9267 -4.9667 -1.3875 11 17 1.8797 -6.7011 -1.4433 12 6 2.5552 -4.2458 -2.4227 13 6 3.1487 -4.9315 -3.5075 14 1 2.7788 -5.9031 -3.7997 15 6 4.2156 -4.3511 -4.2025 16 7 4.8182 -3.2972 -3.7146 17 14 4.7796 -5.0810 -5.8269 18 1 3.6582 -5.0494 -6.7997 19 1 5.9172 -4.2878 -6.3576 20 1 5.2114 -6.4860 -5.6149 21 6 2.5891 -2.8429 -2.3709 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.9297 -2.3998 0.5597 26 1 0.8677 -4.8519 0.4611 27 1 5.5091 -2.8517 -4.2295 28 1 3.0680 -2.2814 -3.1594 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396109887.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:11 Heat of formation + Delta-G solvation = -57.501791 kcal Electronic energy + Delta-G solvation = -16271.462671 eV Core-core repulsion = 13338.009858 eV Total energy + Delta-G solvation = -2933.452812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.011 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91943 -38.99537 -37.26686 -36.81223 -35.66807 -33.69269 -31.69405 -31.31517 -27.35547 -26.20003 -23.50389 -23.07405 -20.68249 -19.12998 -17.95891 -16.99661 -16.85990 -16.67185 -15.96010 -15.51484 -15.28957 -14.64079 -14.41882 -14.13210 -13.73578 -13.33547 -13.28321 -13.04176 -12.85752 -12.73348 -12.46853 -12.20401 -12.04017 -11.96702 -11.74963 -11.39926 -11.13375 -11.01923 -10.46390 -9.48473 -9.35415 -8.68325 -6.43219 -0.15196 0.89767 0.94899 1.36683 1.43118 1.48481 1.70113 1.77586 2.18019 2.68074 2.85816 3.50707 3.73621 3.82353 4.22678 4.43687 4.60798 4.72365 4.78213 4.95649 4.98849 5.16621 5.23439 5.31039 5.64590 5.76730 5.85110 6.10373 6.41038 6.45241 6.75831 6.79846 8.26233 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.007154 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.460839 B = 3912.802006 C = 4978.380112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.037 4.037 3 H 0.140 0.860 4 Cl -0.151 7.151 5 C 0.401 3.599 6 O -0.485 6.485 7 C -0.170 4.170 8 C -0.163 4.163 9 C -0.099 4.099 10 C -0.123 4.123 11 Cl -0.098 7.098 12 C 0.070 3.930 13 C -0.476 4.476 14 H 0.086 0.914 15 C 0.033 3.967 16 N -0.827 5.827 17 Si 0.979 3.021 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.258 1.258 21 C -0.105 4.105 22 H 0.077 0.923 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.155 0.845 26 H 0.136 0.864 27 H 0.289 0.711 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 4.207 6.412 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.081 4.081 3 H 0.158 0.842 4 Cl -0.124 7.124 5 C 0.281 3.719 6 O -0.363 6.363 7 C -0.171 4.171 8 C -0.182 4.182 9 C -0.117 4.117 10 C -0.151 4.151 11 Cl -0.070 7.070 12 C 0.067 3.933 13 C -0.505 4.505 14 H 0.104 0.896 15 C -0.181 4.181 16 N -0.453 5.453 17 Si 0.799 3.201 18 H -0.182 1.182 19 H -0.194 1.194 20 H -0.182 1.182 21 C -0.124 4.124 22 H 0.096 0.904 23 H 0.127 0.873 24 H 0.103 0.897 25 H 0.172 0.828 26 H 0.154 0.846 27 H 0.100 0.900 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.237 4.449 6.022 9.744 hybrid contribution 0.710 -0.564 -0.758 1.182 sum -5.527 3.884 5.264 8.564 Atomic orbital electron populations 1.22183 0.87891 1.05226 1.05588 1.24671 1.00783 0.98875 0.83798 0.84235 1.98725 1.90046 1.81084 1.42581 1.22934 0.72543 0.89251 0.87157 1.90507 1.36586 1.69550 1.39640 1.20267 1.04767 0.93789 0.98298 1.21406 1.04607 0.92765 0.99457 1.20779 0.99734 0.94547 0.96676 1.21333 1.12302 0.82576 0.98910 1.98211 1.97679 1.12631 1.98472 1.17671 0.91608 0.91744 0.92232 1.19810 1.13119 1.04928 1.12629 0.89607 1.26744 0.94669 0.94767 1.01955 1.69814 1.19737 1.18380 1.37379 0.85282 0.78503 0.79281 0.76994 1.18245 1.19424 1.18235 1.21654 0.99145 0.93912 0.97738 0.90424 0.87260 0.89667 0.82808 0.84626 0.90028 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.12 71.98 0.66 -2.30 15 2 C -0.04 -0.97 3.49 29.85 0.10 -0.87 15 3 H 0.14 3.12 8.14 -2.39 -0.02 3.10 15 4 Cl -0.15 -4.12 24.89 -2.72 -0.07 -4.19 15 5 C 0.40 15.33 6.16 28.03 0.17 15.50 15 6 O -0.48 -21.68 17.09 -2.96 -0.05 -21.73 15 7 C -0.17 -7.37 5.69 -20.19 -0.11 -7.49 15 8 C -0.16 -6.13 7.70 22.73 0.18 -5.96 15 9 C -0.10 -3.91 9.78 22.19 0.22 -3.69 15 10 C -0.12 -5.67 6.38 22.88 0.15 -5.52 15 11 Cl -0.10 -4.07 27.59 -2.72 -0.08 -4.15 15 12 C 0.07 3.66 5.56 -21.31 -0.12 3.55 15 13 C -0.48 -24.98 8.50 23.46 0.20 -24.78 15 14 H 0.09 4.37 7.13 -2.91 -0.02 4.35 15 15 C 0.03 1.67 5.24 85.25 0.45 2.12 15 16 N -0.83 -43.86 10.80 21.82 0.24 -43.62 15 17 Si 0.98 38.65 29.58 68.60 2.03 40.68 15 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 19 H -0.27 -10.20 7.11 99.48 0.71 -9.50 15 20 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 21 C -0.10 -5.41 8.21 23.06 0.19 -5.22 15 22 H 0.08 1.62 6.34 -2.39 -0.02 1.61 15 23 H 0.11 1.47 8.14 -2.38 -0.02 1.45 15 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.15 4.71 4.09 -2.91 -0.01 4.69 15 26 H 0.14 4.50 8.06 -2.91 -0.02 4.48 15 27 H 0.29 14.14 8.30 -92.71 -0.77 13.37 15 28 H 0.11 6.41 5.74 -2.91 -0.02 6.39 15 Total: -1.00 -59.91 271.19 5.35 -54.56 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.20 Total: 13.11 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 2.07 Total: -34.66 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.24 Total: -43.62 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Atomic # 17 Polarization: -8.19 SS G_CDS: -0.14 Total: -8.33 kcal Total: -59.91 5.35 -54.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396109887.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.941 kcal (2) G-P(sol) polarization free energy of solvation -59.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds