Wall clock time and date at job start Mon Mar 30 2020 07:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48507 * 109.46753 * 264.60028 * 3 2 1 5 5 H 1.48492 * 109.47335 * 24.60242 * 3 2 1 6 6 H 1.48494 * 109.46981 * 144.60577 * 3 2 1 7 7 C 1.37881 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99925 * 4.78161 * 7 2 1 9 9 C 1.50693 * 119.99865 * 184.77938 * 7 2 1 10 10 H 1.08999 * 109.47813 * 4.96052 * 9 7 2 11 11 C 1.50704 * 109.47175 * 244.95587 * 9 7 2 12 12 C 1.38429 * 120.01157 * 299.72872 * 11 9 7 13 13 F 1.35094 * 120.00485 * 0.02562 * 12 11 9 14 14 C 1.38456 * 119.98530 * 179.72540 * 12 11 9 15 15 C 1.38332 * 120.00794 * 0.57218 * 14 12 11 16 16 Cl 1.73602 * 119.98360 * 179.72995 * 15 14 12 17 17 C 1.38322 * 120.02682 * 359.69712 * 15 14 12 18 18 C 1.38431 * 120.01010 * 120.00174 * 11 9 7 19 19 F 1.35099 * 120.00834 * 359.96059 * 18 11 9 20 20 C 1.53007 * 109.47096 * 124.96218 * 9 7 2 21 21 C 1.52999 * 117.49777 * 175.22345 * 20 9 7 22 22 C 1.53007 * 60.03246 * 107.47306 * 21 20 9 23 23 H 0.96994 * 119.99822 * 0.02562 * 1 2 3 24 24 H 1.07993 * 119.99345 * 180.29465 * 14 12 11 25 25 H 1.08000 * 119.99582 * 180.02562 * 17 15 14 26 26 H 1.08997 * 115.54856 * 29.54697 * 20 9 7 27 27 H 1.09003 * 117.49586 * 214.97343 * 21 20 9 28 28 H 1.08992 * 117.50246 * 359.97438 * 21 20 9 29 29 H 1.09003 * 117.49476 * 107.49497 * 22 21 20 30 30 H 1.08997 * 117.49802 * 252.51525 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6107 1.9806 -1.3940 5 1 1.3943 2.6829 0.5828 6 1 3.4850 1.4758 0.8109 7 6 2.0046 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0770 9 6 3.5076 -1.1962 0.1093 10 1 3.8621 -0.1775 0.2662 11 6 4.1024 -1.7448 -1.1621 12 6 3.7995 -3.0329 -1.5687 13 9 2.9702 -3.7983 -0.8262 14 6 4.3419 -3.5344 -2.7398 15 6 5.1956 -2.7526 -3.4972 16 17 5.8807 -3.3845 -4.9617 17 6 5.5029 -1.4674 -3.0883 18 6 4.9564 -0.9628 -1.9207 19 9 5.2562 0.2927 -1.5219 20 6 3.9322 -2.0716 1.2901 21 6 5.4311 -2.2941 1.5015 22 6 4.6513 -1.3864 2.4550 23 1 -0.4849 0.8400 -0.0004 24 1 4.1019 -4.5376 -3.0596 25 1 6.1692 -0.8574 -3.6802 26 1 3.2623 -2.8979 1.5276 27 1 5.7473 -3.2668 1.8784 28 1 6.1147 -1.8173 0.7991 29 1 4.4544 -1.7621 3.4591 30 1 4.8216 -0.3125 2.3795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260161663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:13 Heat of formation + Delta-G solvation = -52.684743 kcal Electronic energy + Delta-G solvation = -19006.046411 eV Core-core repulsion = 15656.838895 eV Total energy + Delta-G solvation = -3349.207515 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.047 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.61706 -48.34153 -38.80575 -37.08024 -36.16481 -33.09178 -31.36342 -30.10027 -27.84377 -23.57908 -22.68881 -21.96373 -21.64717 -19.39323 -17.85470 -17.57103 -16.47003 -15.73156 -15.56853 -15.22632 -14.95965 -14.70275 -14.48874 -14.09177 -13.61464 -13.22862 -12.87056 -12.72414 -12.48216 -11.85544 -11.52367 -11.24953 -11.16770 -11.02945 -10.94982 -10.81021 -10.48858 -9.92538 -9.72589 -9.24437 -9.11446 -8.70211 -8.49973 -8.10680 -6.23536 -4.24801 1.23282 1.26993 2.05713 3.21979 3.28866 3.31945 3.61978 4.28663 4.43288 4.44769 4.67622 5.03410 5.04898 5.08693 5.33780 5.53039 5.61243 5.68034 5.72454 6.09770 6.10771 6.14579 6.25131 6.31840 6.40112 6.61893 6.66630 6.80832 7.05384 7.17368 7.50894 8.33371 8.84011 9.36594 10.87906 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.007739 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.865646 B = 3617.119330 C = 3864.788517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.080 3.920 3 Si 0.866 3.134 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.086 0.914 9 C 0.064 3.936 10 H 0.064 0.936 11 C -0.092 4.092 12 C 0.156 3.844 13 F -0.114 7.114 14 C -0.161 4.161 15 C -0.007 4.007 16 Cl -0.066 7.066 17 C -0.158 4.158 18 C 0.116 3.884 19 F -0.130 7.130 20 C -0.115 4.115 21 C -0.201 4.201 22 C -0.181 4.181 23 H 0.268 0.732 24 H 0.144 0.856 25 H 0.143 0.857 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.446 -4.587 -4.391 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.124 4.124 3 Si 0.693 3.307 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.542 4.542 8 H 0.104 0.896 9 C 0.045 3.955 10 H 0.082 0.918 11 C -0.094 4.094 12 C 0.136 3.864 13 F -0.092 7.092 14 C -0.180 4.180 15 C -0.034 4.034 16 Cl -0.037 7.037 17 C -0.177 4.177 18 C 0.096 3.904 19 F -0.108 7.108 20 C -0.133 4.133 21 C -0.238 4.238 22 C -0.218 4.218 23 H 0.078 0.922 24 H 0.162 0.838 25 H 0.160 0.840 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.282 -4.496 -4.471 12.941 hybrid contribution 0.305 1.008 -0.053 1.055 sum 11.587 -3.488 -4.524 12.918 Atomic orbital electron populations 1.69872 1.06216 1.27364 1.48704 1.25078 0.94755 0.98857 0.93744 0.87015 0.80304 0.83866 0.79485 1.19596 1.21151 1.18476 1.20880 0.87216 0.95341 1.50762 0.89569 1.18081 0.96982 0.95384 0.85060 0.91784 1.20929 0.94436 0.92437 1.01620 1.16759 0.91216 0.88737 0.89666 1.91532 1.68542 1.73902 1.75245 1.20909 1.00397 1.01770 0.94959 1.19889 0.99549 0.93749 0.90226 1.98351 1.83809 1.86813 1.34740 1.20797 1.04222 0.95505 0.97211 1.16971 0.98206 0.80758 0.94434 1.91483 1.91633 1.37289 1.90393 1.22658 0.91785 1.01388 0.97479 1.22939 0.96422 1.00526 1.03904 1.22891 1.05544 0.98300 0.95070 0.92243 0.83832 0.83965 0.87734 0.89777 0.89874 0.89525 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 21.11 27.38 -169.99 -4.65 16.46 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.05 6.21 56.52 0.35 -5.70 16 7 C -0.51 -13.52 8.19 -34.44 -0.28 -13.80 16 8 H 0.09 2.50 7.13 -52.49 -0.37 2.13 16 9 C 0.06 1.45 1.97 -92.92 -0.18 1.26 16 10 H 0.06 1.51 3.20 -51.93 -0.17 1.34 16 11 C -0.09 -1.87 4.21 -104.48 -0.44 -2.31 16 12 C 0.16 2.95 6.81 -39.43 -0.27 2.68 16 13 F -0.11 -2.29 14.58 2.25 0.03 -2.26 16 14 C -0.16 -2.52 9.81 -39.47 -0.39 -2.91 16 15 C -0.01 -0.11 6.32 -39.52 -0.25 -0.36 16 16 Cl -0.07 -0.82 28.95 -51.86 -1.50 -2.32 16 17 C -0.16 -2.45 9.81 -39.47 -0.39 -2.84 16 18 C 0.12 2.17 7.24 -39.43 -0.29 1.89 16 19 F -0.13 -2.53 16.19 2.25 0.04 -2.49 16 20 C -0.11 -2.30 4.31 -90.58 -0.39 -2.69 16 21 C -0.20 -3.39 9.78 -26.73 -0.26 -3.65 16 22 C -0.18 -3.22 10.18 -26.69 -0.27 -3.49 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 25 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 26 H 0.10 2.17 7.76 -51.93 -0.40 1.77 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 1.39 8.02 -51.93 -0.42 0.98 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 280.43 15.07 4.23 4.23 Total: -1.00 -27.81 280.43 -7.25 -35.06 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -2.65 Total: 0.79 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -3.50 Total: -24.10 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.77 Total: -25.37 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.07 Total: -4.75 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.65 Total: 16.46 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.81 -7.25 -35.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260161663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.627 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds