Wall clock time and date at job start Mon Mar 30 2020 07:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48507 * 109.46753 * 264.60028 * 3 2 1 5 5 H 1.48492 * 109.47335 * 24.60242 * 3 2 1 6 6 H 1.48494 * 109.46981 * 144.60577 * 3 2 1 7 7 C 1.37881 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99925 * 4.78161 * 7 2 1 9 9 C 1.50693 * 119.99865 * 184.77938 * 7 2 1 10 10 H 1.08999 * 109.47813 * 4.96052 * 9 7 2 11 11 C 1.50704 * 109.47175 * 244.95587 * 9 7 2 12 12 C 1.38429 * 120.01157 * 299.72872 * 11 9 7 13 13 F 1.35094 * 120.00485 * 0.02562 * 12 11 9 14 14 C 1.38456 * 119.98530 * 179.72540 * 12 11 9 15 15 C 1.38332 * 120.00794 * 0.57218 * 14 12 11 16 16 Cl 1.73602 * 119.98360 * 179.72995 * 15 14 12 17 17 C 1.38322 * 120.02682 * 359.69712 * 15 14 12 18 18 C 1.38431 * 120.01010 * 120.00174 * 11 9 7 19 19 F 1.35099 * 120.00834 * 359.96059 * 18 11 9 20 20 C 1.53007 * 109.47096 * 124.96218 * 9 7 2 21 21 C 1.52999 * 117.49777 * 175.22345 * 20 9 7 22 22 C 1.53007 * 60.03246 * 107.47306 * 21 20 9 23 23 H 0.96994 * 119.99822 * 0.02562 * 1 2 3 24 24 H 1.07993 * 119.99345 * 180.29465 * 14 12 11 25 25 H 1.08000 * 119.99582 * 180.02562 * 17 15 14 26 26 H 1.08997 * 115.54856 * 29.54697 * 20 9 7 27 27 H 1.09003 * 117.49586 * 214.97343 * 21 20 9 28 28 H 1.08992 * 117.50246 * 359.97438 * 21 20 9 29 29 H 1.09003 * 117.49476 * 107.49497 * 22 21 20 30 30 H 1.08997 * 117.49802 * 252.51525 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6107 1.9806 -1.3940 5 1 1.3943 2.6829 0.5828 6 1 3.4850 1.4758 0.8109 7 6 2.0046 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0770 9 6 3.5076 -1.1962 0.1093 10 1 3.8621 -0.1775 0.2662 11 6 4.1024 -1.7448 -1.1621 12 6 3.7995 -3.0329 -1.5687 13 9 2.9702 -3.7983 -0.8262 14 6 4.3419 -3.5344 -2.7398 15 6 5.1956 -2.7526 -3.4972 16 17 5.8807 -3.3845 -4.9617 17 6 5.5029 -1.4674 -3.0883 18 6 4.9564 -0.9628 -1.9207 19 9 5.2562 0.2927 -1.5219 20 6 3.9322 -2.0716 1.2901 21 6 5.4311 -2.2941 1.5015 22 6 4.6513 -1.3864 2.4550 23 1 -0.4849 0.8400 -0.0004 24 1 4.1019 -4.5376 -3.0596 25 1 6.1692 -0.8574 -3.6802 26 1 3.2623 -2.8979 1.5276 27 1 5.7473 -3.2668 1.8784 28 1 6.1147 -1.8173 0.7991 29 1 4.4544 -1.7621 3.4591 30 1 4.8216 -0.3125 2.3795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260161663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:13 Heat of formation + Delta-G solvation = -66.306696 kcal Electronic energy + Delta-G solvation = -19006.637103 eV Core-core repulsion = 15656.838895 eV Total energy + Delta-G solvation = -3349.798207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.047 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.06967 -49.83946 -40.19935 -38.49404 -37.36921 -35.00114 -33.02591 -31.43302 -29.52402 -25.38158 -24.07297 -23.41243 -23.03880 -20.98589 -19.45049 -19.23528 -18.04756 -17.11143 -17.06609 -16.66340 -16.61197 -16.22208 -15.93163 -15.62905 -15.17161 -14.91670 -14.41691 -14.05873 -14.03289 -13.45279 -13.04396 -12.96872 -12.73934 -12.48539 -12.32158 -12.11047 -11.95974 -11.73506 -11.51489 -10.94409 -10.77249 -10.63918 -9.84032 -9.54303 -8.35329 -6.39165 -0.12418 -0.08023 0.86637 1.27578 1.30644 1.37355 2.24204 2.26816 2.87430 3.05238 3.14080 3.33451 3.67252 3.84543 3.91056 4.07051 4.17116 4.26138 4.32497 4.63575 4.76975 4.77960 4.84112 4.92948 5.00324 5.10467 5.19721 5.29218 5.43574 5.57980 5.67968 6.25552 6.69033 7.25234 8.80430 Molecular weight = 272.05amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.007739 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.865646 B = 3617.119330 C = 3864.788517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.024 3.976 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.500 4.500 8 H 0.047 0.953 9 C 0.067 3.933 10 H 0.055 0.945 11 C -0.119 4.119 12 C 0.136 3.864 13 F -0.130 7.130 14 C -0.147 4.147 15 C 0.002 3.998 16 Cl -0.033 7.033 17 C -0.142 4.142 18 C 0.103 3.897 19 F -0.137 7.137 20 C -0.145 4.145 21 C -0.171 4.171 22 C -0.178 4.178 23 H 0.267 0.733 24 H 0.170 0.830 25 H 0.173 0.827 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.411 -4.856 -5.607 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.174 4.174 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.049 3.951 10 H 0.073 0.927 11 C -0.121 4.121 12 C 0.116 3.884 13 F -0.108 7.108 14 C -0.166 4.166 15 C -0.025 4.025 16 Cl -0.004 7.004 17 C -0.162 4.162 18 C 0.083 3.917 19 F -0.116 7.116 20 C -0.164 4.164 21 C -0.207 4.207 22 C -0.215 4.215 23 H 0.077 0.923 24 H 0.187 0.813 25 H 0.191 0.809 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.280 -4.779 -5.689 16.097 hybrid contribution -0.528 0.917 0.207 1.078 sum 13.752 -3.862 -5.483 15.300 Atomic orbital electron populations 1.70007 1.07860 1.28064 1.51781 1.25806 0.95363 1.02194 0.94080 0.86156 0.79662 0.79996 0.79802 1.19222 1.20929 1.16791 1.21049 0.89864 0.93623 1.49255 0.93433 1.17880 0.94138 0.95654 0.87466 0.92726 1.20737 0.96643 0.93745 1.00999 1.17012 0.91915 0.88598 0.90909 1.91492 1.69264 1.74165 1.75897 1.21143 0.99234 1.02859 0.93408 1.20009 0.98384 0.93327 0.90817 1.98375 1.83121 1.86355 1.32556 1.21070 1.03340 0.95857 0.95890 1.17140 0.98785 0.80387 0.95343 1.91457 1.91719 1.37746 1.90640 1.22384 0.94152 1.01719 0.98114 1.22972 0.93715 1.01369 1.02685 1.23012 1.04629 0.98340 0.95542 0.92334 0.81263 0.80915 0.89406 0.87361 0.89450 0.87554 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 2 C 0.02 1.39 5.47 84.66 0.46 1.85 16 3 Si 0.92 44.20 27.38 68.60 1.88 46.08 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.24 -10.94 6.21 99.48 0.62 -10.32 16 7 C -0.50 -27.90 8.19 25.60 0.21 -27.69 16 8 H 0.05 2.94 7.13 -2.91 -0.02 2.92 16 9 C 0.07 3.09 1.97 -12.28 -0.02 3.06 16 10 H 0.05 2.56 3.20 -2.39 -0.01 2.55 16 11 C -0.12 -4.79 4.21 -19.77 -0.08 -4.87 16 12 C 0.14 5.05 6.81 22.37 0.15 5.20 16 13 F -0.13 -5.35 14.58 44.97 0.66 -4.69 16 14 C -0.15 -4.26 9.81 22.34 0.22 -4.04 16 15 C 0.00 0.05 6.32 22.31 0.14 0.19 16 16 Cl -0.03 -0.69 28.95 -2.72 -0.08 -0.77 16 17 C -0.14 -3.95 9.81 22.34 0.22 -3.73 16 18 C 0.10 3.67 7.24 22.37 0.16 3.83 16 19 F -0.14 -5.11 16.19 44.97 0.73 -4.38 16 20 C -0.15 -5.84 4.31 -10.77 -0.05 -5.89 16 21 C -0.17 -5.40 9.78 30.60 0.30 -5.10 16 22 C -0.18 -6.08 10.18 30.62 0.31 -5.77 16 23 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 24 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 25 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 26 H 0.09 3.78 7.76 -2.39 -0.02 3.76 16 27 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.09 2.71 8.02 -2.39 -0.02 2.69 16 29 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 Total: -1.00 -62.58 280.43 6.60 -55.98 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.09 Total: 8.31 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 2.02 Total: -42.96 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.30 Total: -57.57 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 1.38 Total: -9.07 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -62.58 6.60 -55.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260161663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.327 kcal (2) G-P(sol) polarization free energy of solvation -62.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds