Wall clock time and date at job start Mon Mar 30 2020 07:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00170 * 2 1 4 4 H 1.48498 * 109.47236 * 269.99889 * 3 2 1 5 5 H 1.48504 * 109.46874 * 30.00219 * 3 2 1 6 6 H 1.48498 * 109.47348 * 149.99851 * 3 2 1 7 7 C 1.37879 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99876 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00160 * 179.97438 * 7 2 1 10 10 H 1.09004 * 110.01770 * 59.94128 * 9 7 2 11 11 C 1.54266 * 110.03456 * 298.55088 * 9 7 2 12 12 C 1.54894 * 104.31305 * 217.03513 * 11 9 7 13 13 C 1.55238 * 102.58338 * 37.93170 * 12 11 9 14 14 H 1.09006 * 110.46947 * 80.77225 * 13 12 11 15 15 N 1.46504 * 110.58101 * 203.33396 * 13 12 11 16 16 C 1.38676 * 120.00304 * 269.87814 * 15 13 12 17 17 N 1.29631 * 124.93172 * 179.97438 * 16 15 13 18 18 C 1.32215 * 116.86325 * 179.97438 * 17 16 15 19 19 C 1.33410 * 114.54170 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 125.95431 * 179.97438 * 19 18 17 21 21 S 1.70960 * 124.93161 * 359.69135 * 16 15 13 22 22 C 1.53869 * 110.03474 * 181.37930 * 9 7 2 23 23 H 0.97005 * 119.99703 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.48629 * 335.78266 * 11 9 7 25 25 H 1.08998 * 110.48744 * 98.29170 * 11 9 7 26 26 H 1.08996 * 110.75388 * 156.31523 * 12 11 9 27 27 H 1.08993 * 110.76071 * 279.69749 * 12 11 9 28 28 H 0.97000 * 119.99708 * 89.87424 * 15 13 12 29 29 H 1.08008 * 122.72625 * 179.97438 * 18 17 16 30 30 H 1.08999 * 110.04012 * 238.57289 * 22 9 7 31 31 H 1.09003 * 110.03070 * 0.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8850 -0.6805 0.8859 11 6 4.0395 -0.5022 -1.2738 12 6 5.2961 -1.3208 -1.6612 13 6 4.8685 -2.7753 -1.3274 14 1 4.2579 -3.1871 -2.1310 15 7 6.0447 -3.6175 -1.0957 16 6 6.6313 -4.2955 -2.1537 17 7 7.6711 -5.0636 -2.0578 18 6 8.0978 -5.6333 -3.1720 19 6 7.3834 -5.3314 -4.2575 20 17 7.6801 -5.9111 -5.8667 21 16 6.0839 -4.2453 -3.7725 22 6 4.0387 -2.6392 -0.0341 23 1 -0.4850 0.8401 -0.0004 24 1 3.2950 -0.5469 -2.0687 25 1 4.3086 0.5326 -1.0622 26 1 5.5142 -1.2139 -2.7238 27 1 6.1532 -1.0218 -1.0578 28 1 6.4131 -3.7009 -0.2023 29 1 8.9550 -6.2897 -3.2010 30 1 4.6686 -2.8276 0.8353 31 1 3.2044 -3.3406 -0.0506 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378873708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:26 Heat of formation + Delta-G solvation = 34.678631 kcal Electronic energy + Delta-G solvation = -16133.567970 eV Core-core repulsion = 13374.281953 eV Total energy + Delta-G solvation = -2759.286017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71898 -38.23887 -36.76708 -34.63623 -32.26402 -29.45605 -28.62816 -27.28342 -24.45994 -23.58923 -21.11367 -20.35661 -19.13901 -18.51382 -17.04118 -16.61256 -15.62887 -15.13623 -15.03054 -14.71061 -13.83011 -13.67374 -13.28156 -12.81992 -12.69050 -12.43569 -12.23403 -11.75506 -11.26151 -10.97935 -10.82613 -10.61616 -10.52883 -10.15127 -9.95425 -9.94526 -9.72638 -9.49606 -9.23482 -9.09315 -8.62967 -7.71725 -6.14786 -4.14656 0.76800 0.82242 1.57549 2.18472 2.81787 3.02572 3.22913 3.32139 3.33365 4.34626 4.65676 4.94380 5.06516 5.23193 5.27193 5.38114 5.74519 5.89840 5.99635 6.02383 6.13616 6.23336 6.46790 6.57865 6.64130 6.85614 7.02695 7.29672 7.37519 7.68069 7.81392 8.42697 8.88269 9.47276 10.98196 Molecular weight = 272.04amu Principal moments of inertia in cm(-1) A = 0.040177 B = 0.004038 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.750343 B = 6932.103701 C = 7111.419360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.013 3.987 10 H 0.033 0.967 11 C -0.131 4.131 12 C -0.136 4.136 13 C 0.138 3.862 14 H 0.088 0.912 15 N -0.674 5.674 16 C 0.330 3.670 17 N -0.558 5.558 18 C 0.112 3.888 19 C -0.254 4.254 20 Cl -0.015 7.015 21 S 0.149 5.851 22 C -0.106 4.106 23 H 0.264 0.736 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.412 0.588 29 H 0.177 0.823 30 H 0.055 0.945 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.578 -8.077 -7.600 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.006 4.006 10 H 0.051 0.949 11 C -0.169 4.169 12 C -0.176 4.176 13 C 0.033 3.967 14 H 0.106 0.894 15 N -0.311 5.311 16 C -0.041 4.041 17 N -0.285 5.285 18 C -0.042 4.042 19 C -0.404 4.404 20 Cl 0.013 6.987 21 S 0.395 5.605 22 C -0.144 4.144 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.251 0.749 29 H 0.194 0.806 30 H 0.074 0.926 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.662 -7.456 -7.735 17.381 hybrid contribution 1.320 0.293 0.135 1.359 sum 14.982 -7.163 -7.600 18.263 Atomic orbital electron populations 1.69898 1.06312 1.27024 1.50499 1.25005 0.94642 0.99036 0.94351 0.86941 0.79998 0.83765 0.78502 1.20238 1.22081 1.19008 1.21127 0.88419 0.94486 1.51243 0.90706 1.19702 0.97022 0.90415 0.93452 0.94858 1.22875 0.95252 0.97775 1.01024 1.23032 0.99396 0.94538 1.00589 1.22438 0.83912 0.89601 1.00705 0.89377 1.44629 1.31114 1.48140 1.07220 1.23662 0.92949 0.93947 0.93542 1.66678 1.15382 1.16895 1.29557 1.21444 0.99653 0.98435 0.84673 1.26144 1.07044 1.14941 0.92262 1.98327 1.95013 1.87153 1.18231 1.84294 1.29319 1.46095 1.00808 1.22380 0.97939 1.00723 0.93375 0.92593 0.90731 0.93169 0.92083 0.91456 0.74932 0.80588 0.92599 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.96 55.43 0.77 -25.72 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 3 Si 0.88 20.67 24.63 -169.99 -4.19 16.48 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -5.93 6.34 56.52 0.36 -5.57 16 7 C -0.52 -13.43 8.96 -34.44 -0.31 -13.74 16 8 H 0.07 2.12 7.57 -52.49 -0.40 1.72 16 9 C 0.01 0.28 2.39 -90.66 -0.22 0.06 16 10 H 0.03 0.72 7.21 -51.93 -0.37 0.35 16 11 C -0.13 -2.51 4.60 -25.07 -0.12 -2.63 16 12 C -0.14 -2.10 6.61 -24.55 -0.16 -2.26 16 13 C 0.14 2.05 3.19 -66.08 -0.21 1.84 16 14 H 0.09 1.33 7.21 -51.93 -0.37 0.96 16 15 N -0.67 -9.04 5.32 -53.98 -0.29 -9.33 16 16 C 0.33 4.58 8.24 -87.66 -0.72 3.86 16 17 N -0.56 -7.89 10.61 -15.16 -0.16 -8.05 16 18 C 0.11 1.37 11.31 -19.07 -0.22 1.15 16 19 C -0.25 -3.10 7.19 29.04 0.21 -2.89 16 20 Cl -0.02 -0.16 29.30 -51.86 -1.52 -1.68 16 21 S 0.15 1.91 21.76 -107.50 -2.34 -0.42 16 22 C -0.11 -1.82 6.18 -25.62 -0.16 -1.97 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.07 1.52 7.85 -51.93 -0.41 1.11 16 25 H 0.05 0.97 5.72 -51.93 -0.30 0.67 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.41 5.07 8.49 -40.82 -0.35 4.73 16 29 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.06 0.85 7.73 -51.93 -0.40 0.45 16 31 H 0.07 1.37 7.37 -51.93 -0.38 0.99 16 LS Contribution 282.07 15.07 4.25 4.25 Total: -1.00 -28.15 282.07 -8.90 -37.05 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.43 Total: 2.12 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.00 Total: -14.70 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.33 Total: -43.09 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.19 Total: 16.48 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.34 Total: -0.42 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.15 -8.90 -37.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378873708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.725 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds