Wall clock time and date at job start Mon Mar 30 2020 07:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00170 * 2 1 4 4 H 1.48498 * 109.47236 * 269.99889 * 3 2 1 5 5 H 1.48504 * 109.46874 * 30.00219 * 3 2 1 6 6 H 1.48498 * 109.47348 * 149.99851 * 3 2 1 7 7 C 1.37879 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99876 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00160 * 179.97438 * 7 2 1 10 10 H 1.09004 * 110.01770 * 59.94128 * 9 7 2 11 11 C 1.54266 * 110.03456 * 298.55088 * 9 7 2 12 12 C 1.54894 * 104.31305 * 217.03513 * 11 9 7 13 13 C 1.55238 * 102.58338 * 37.93170 * 12 11 9 14 14 H 1.09006 * 110.46947 * 80.77225 * 13 12 11 15 15 N 1.46504 * 110.58101 * 203.33396 * 13 12 11 16 16 C 1.38676 * 120.00304 * 269.87814 * 15 13 12 17 17 N 1.29631 * 124.93172 * 179.97438 * 16 15 13 18 18 C 1.32215 * 116.86325 * 179.97438 * 17 16 15 19 19 C 1.33410 * 114.54170 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 125.95431 * 179.97438 * 19 18 17 21 21 S 1.70960 * 124.93161 * 359.69135 * 16 15 13 22 22 C 1.53869 * 110.03474 * 181.37930 * 9 7 2 23 23 H 0.97005 * 119.99703 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.48629 * 335.78266 * 11 9 7 25 25 H 1.08998 * 110.48744 * 98.29170 * 11 9 7 26 26 H 1.08996 * 110.75388 * 156.31523 * 12 11 9 27 27 H 1.08993 * 110.76071 * 279.69749 * 12 11 9 28 28 H 0.97000 * 119.99708 * 89.87424 * 15 13 12 29 29 H 1.08008 * 122.72625 * 179.97438 * 18 17 16 30 30 H 1.08999 * 110.04012 * 238.57289 * 22 9 7 31 31 H 1.09003 * 110.03070 * 0.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8850 -0.6805 0.8859 11 6 4.0395 -0.5022 -1.2738 12 6 5.2961 -1.3208 -1.6612 13 6 4.8685 -2.7753 -1.3274 14 1 4.2579 -3.1871 -2.1310 15 7 6.0447 -3.6175 -1.0957 16 6 6.6313 -4.2955 -2.1537 17 7 7.6711 -5.0636 -2.0578 18 6 8.0978 -5.6333 -3.1720 19 6 7.3834 -5.3314 -4.2575 20 17 7.6801 -5.9111 -5.8667 21 16 6.0839 -4.2453 -3.7725 22 6 4.0387 -2.6392 -0.0341 23 1 -0.4850 0.8401 -0.0004 24 1 3.2950 -0.5469 -2.0687 25 1 4.3086 0.5326 -1.0622 26 1 5.5142 -1.2139 -2.7238 27 1 6.1532 -1.0218 -1.0578 28 1 6.4131 -3.7009 -0.2023 29 1 8.9550 -6.2897 -3.2010 30 1 4.6686 -2.8276 0.8353 31 1 3.2044 -3.3406 -0.0506 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378873708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:26 Heat of formation + Delta-G solvation = 17.555603 kcal Electronic energy + Delta-G solvation = -16134.310481 eV Core-core repulsion = 13374.281953 eV Total energy + Delta-G solvation = -2760.028528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74647 -39.55510 -37.68001 -35.97675 -34.16979 -30.70837 -30.06799 -28.61218 -25.74952 -25.09686 -22.23133 -21.63945 -20.64871 -19.57608 -18.89935 -17.68834 -16.94724 -16.49318 -16.07720 -16.02760 -15.20532 -14.97284 -14.79928 -14.46992 -14.08435 -13.59559 -13.20782 -13.17150 -12.65789 -12.65206 -12.17058 -12.11048 -11.75983 -11.64834 -11.52496 -11.45927 -10.97318 -10.88350 -10.73797 -10.68318 -10.23071 -8.73759 -8.25777 -6.29040 -0.20770 -0.16711 0.59501 1.24728 1.36745 1.39982 1.49034 1.83131 1.95225 2.37204 3.09319 3.62453 3.73641 3.82276 4.08614 4.34255 4.49012 4.60982 4.66730 4.74082 4.88993 4.96414 4.98562 5.12976 5.22622 5.47847 5.60527 5.68461 5.78988 6.30503 6.35128 6.78490 6.81343 7.36470 8.90897 Molecular weight = 272.04amu Principal moments of inertia in cm(-1) A = 0.040177 B = 0.004038 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.750343 B = 6932.103701 C = 7111.419360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.011 3.989 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.301 1.301 6 H -0.241 1.241 7 C -0.514 4.514 8 H 0.035 0.965 9 C 0.007 3.993 10 H 0.033 0.967 11 C -0.131 4.131 12 C -0.124 4.124 13 C 0.151 3.849 14 H 0.085 0.915 15 N -0.669 5.669 16 C 0.319 3.681 17 N -0.571 5.571 18 C 0.106 3.894 19 C -0.254 4.254 20 Cl -0.001 7.001 21 S 0.149 5.851 22 C -0.101 4.101 23 H 0.264 0.736 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.418 0.582 29 H 0.201 0.799 30 H 0.079 0.921 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.405 -7.993 -8.273 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.189 1.189 5 H -0.229 1.229 6 H -0.165 1.165 7 C -0.552 4.552 8 H 0.053 0.947 9 C -0.012 4.012 10 H 0.052 0.948 11 C -0.169 4.169 12 C -0.163 4.163 13 C 0.047 3.953 14 H 0.103 0.897 15 N -0.308 5.308 16 C -0.052 4.052 17 N -0.298 5.298 18 C -0.047 4.047 19 C -0.404 4.404 20 Cl 0.027 6.973 21 S 0.394 5.606 22 C -0.140 4.140 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.258 0.742 29 H 0.218 0.782 30 H 0.098 0.902 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.531 -7.401 -8.416 19.972 hybrid contribution 0.414 0.124 0.305 0.529 sum 16.945 -7.278 -8.111 20.147 Atomic orbital electron populations 1.70061 1.08348 1.27887 1.53076 1.25870 0.95291 1.03005 0.94357 0.85959 0.79408 0.78843 0.79252 1.18914 1.22860 1.16498 1.21490 0.91377 0.92807 1.49514 0.94698 1.19693 0.93555 0.93374 0.94567 0.94845 1.22714 0.96624 0.98382 0.99210 1.22954 0.97882 0.93530 1.01973 1.22104 0.84152 0.89972 0.99118 0.89727 1.44359 1.30692 1.48144 1.07595 1.23734 0.93263 0.94305 0.93849 1.66687 1.15552 1.17033 1.30552 1.21819 1.00265 0.98507 0.84105 1.26241 1.06586 1.14540 0.93036 1.98336 1.94884 1.86923 1.17204 1.84297 1.29587 1.46313 1.00361 1.22219 0.98137 0.97748 0.95858 0.92742 0.92499 0.92835 0.90372 0.89840 0.74200 0.78189 0.90234 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.15 13.96 21.45 0.30 -57.85 16 2 C 0.01 0.64 5.45 84.66 0.46 1.10 16 3 Si 0.94 42.37 24.63 68.60 1.69 44.06 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.24 -9.86 6.34 99.48 0.63 -9.23 16 7 C -0.51 -27.45 8.96 25.60 0.23 -27.22 16 8 H 0.03 2.08 7.57 -2.91 -0.02 2.06 16 9 C 0.01 0.30 2.39 -10.82 -0.03 0.28 16 10 H 0.03 1.39 7.21 -2.39 -0.02 1.37 16 11 C -0.13 -4.76 4.60 31.67 0.15 -4.61 16 12 C -0.12 -3.44 6.61 32.01 0.21 -3.23 16 13 C 0.15 4.21 3.19 46.19 0.15 4.36 16 14 H 0.08 2.44 7.21 -2.38 -0.02 2.42 16 15 N -0.67 -16.32 5.32 -324.70 -1.73 -18.05 16 16 C 0.32 8.13 8.24 179.31 1.48 9.61 16 17 N -0.57 -14.76 10.61 -201.88 -2.14 -16.90 16 18 C 0.11 2.32 11.31 83.54 0.95 3.27 16 19 C -0.25 -5.61 7.19 66.73 0.48 -5.13 16 20 Cl 0.00 -0.03 29.30 -2.72 -0.08 -0.11 16 21 S 0.15 3.52 21.76 -56.49 -1.23 2.29 16 22 C -0.10 -3.36 6.18 31.32 0.19 -3.16 16 23 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 24 H 0.06 2.25 7.85 -2.39 -0.02 2.24 16 25 H 0.05 1.90 5.72 -2.39 -0.01 1.89 16 26 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.42 9.17 8.49 -92.71 -0.79 8.38 16 29 H 0.20 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.08 2.24 7.73 -2.39 -0.02 2.22 16 31 H 0.06 2.10 7.37 -2.39 -0.02 2.08 16 Total: -1.00 -61.40 282.07 1.38 -60.02 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.30 Total: 11.30 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 4.27 Total: -24.74 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -3.57 Total: -92.81 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.69 Total: 44.06 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.23 Total: 2.29 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -61.40 1.38 -60.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378873708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.578 kcal (2) G-P(sol) polarization free energy of solvation -61.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds