Wall clock time and date at job start Mon Mar 30 2020 07:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99586 * 2 1 4 4 H 1.48493 * 109.46975 * 269.99608 * 3 2 1 5 5 H 1.48503 * 109.47357 * 29.99529 * 3 2 1 6 6 H 1.48496 * 109.47079 * 149.99720 * 3 2 1 7 7 C 1.37871 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47131 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.47038 * 180.02562 * 11 10 9 13 13 C 1.35879 * 116.99848 * 180.02562 * 12 11 10 14 14 C 1.39849 * 119.57390 * 359.97438 * 13 12 11 15 15 C 1.35994 * 120.93645 * 180.02562 * 14 13 12 16 16 C 1.40574 * 119.75439 * 359.97438 * 15 14 13 17 17 C 1.40573 * 121.15988 * 179.97438 * 16 15 14 18 18 C 1.35995 * 119.75181 * 180.02562 * 17 16 15 19 19 C 1.39851 * 120.93373 * 0.02562 * 18 17 16 20 20 O 1.35885 * 119.56853 * 179.97438 * 19 18 17 21 21 C 1.36572 * 120.85923 * 0.25530 * 19 18 17 22 22 C 1.40484 * 119.62313 * 359.46161 * 21 19 18 23 23 C 1.36572 * 119.57062 * 180.02562 * 13 12 11 24 24 H 0.96993 * 120.00464 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46542 * 60.00079 * 9 7 2 26 26 H 1.08991 * 109.47342 * 300.00133 * 9 7 2 27 27 H 1.09000 * 109.46358 * 60.00618 * 10 9 7 28 28 H 1.08999 * 109.47084 * 300.00284 * 10 9 7 29 29 H 1.09003 * 109.46752 * 60.00541 * 11 10 9 30 30 H 1.08994 * 109.47211 * 300.00817 * 11 10 9 31 31 H 1.07999 * 119.52986 * 359.97438 * 14 13 12 32 32 H 1.08002 * 120.12201 * 180.02562 * 15 14 13 33 33 H 1.08001 * 120.12800 * 0.04809 * 17 16 15 34 34 H 1.08000 * 119.53649 * 180.02562 * 18 17 16 35 35 H 0.96705 * 113.99564 * 90.00522 * 20 19 18 36 36 H 1.07997 * 120.18866 * 179.72174 * 21 19 18 37 37 H 1.07995 * 120.18750 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 8 2.4093 -6.0732 0.0005 13 6 1.8900 -7.3288 -0.0005 14 6 0.5022 -7.5018 -0.0015 15 6 -0.0473 -8.7458 -0.0020 16 6 0.7872 -9.8770 -0.0021 17 6 0.2509 -11.1765 -0.0020 18 6 1.0849 -12.2507 -0.0015 19 6 2.4733 -12.0830 -0.0005 20 8 3.2807 -13.1759 0.0004 21 6 3.0281 -10.8351 0.0052 22 6 2.1944 -9.7044 -0.0013 23 6 2.7300 -8.4056 0.0005 24 1 -0.4850 0.8399 -0.0004 25 1 0.6249 -2.5570 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 2.8721 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.8543 -5.0446 -0.8904 30 1 0.8536 -5.0451 0.8895 31 1 -0.1422 -6.6351 -0.0011 32 1 -1.1208 -8.8641 -0.0032 33 1 -0.8193 -11.3212 -0.0027 34 1 0.6691 -13.2475 -0.0019 35 1 3.5152 -13.4925 -0.8828 36 1 4.1017 -10.7181 0.0104 37 1 3.8001 -8.2595 0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:50 Heat of formation + Delta-G solvation = -57.104731 kcal Electronic energy + Delta-G solvation = -19031.946311 eV Core-core repulsion = 15931.900591 eV Total energy + Delta-G solvation = -3100.045721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78092 -39.25876 -37.66187 -34.91473 -33.93083 -32.79233 -31.70842 -29.25237 -29.05079 -26.84566 -23.84377 -23.47641 -22.35271 -22.10409 -20.30506 -18.96009 -17.87046 -17.38949 -16.56270 -16.08317 -15.86333 -15.57967 -14.89884 -14.58983 -14.48343 -13.91248 -13.71729 -13.59155 -13.33945 -12.88445 -12.70245 -12.22277 -11.93752 -11.79983 -11.39435 -11.16484 -10.91767 -10.77841 -10.61904 -10.47363 -10.44158 -10.01546 -9.74350 -9.56915 -9.19665 -8.41711 -8.36772 -7.76625 -6.06827 -4.09524 0.35923 0.85681 1.89642 2.74848 3.29301 3.35253 3.37664 3.43520 3.85216 4.04663 4.41784 4.44729 4.73882 4.77509 4.85058 5.05554 5.14072 5.22629 5.29482 5.47785 5.49413 5.54063 5.68861 5.77377 5.87382 5.93455 6.04271 6.19815 6.30140 6.35130 6.50738 6.53764 6.56913 6.74570 6.94509 7.38081 7.54820 7.59071 7.67212 7.91584 8.33295 8.96676 9.55080 11.04693 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.056332 B = 0.002619 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.932308 B =10690.280961 C =11158.905758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.057 3.943 12 O -0.314 6.314 13 C 0.152 3.848 14 C -0.187 4.187 15 C -0.065 4.065 16 C -0.098 4.098 17 C -0.073 4.073 18 C -0.160 4.160 19 C 0.114 3.886 20 O -0.502 6.502 21 C -0.144 4.144 22 C 0.004 3.996 23 C -0.171 4.171 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.390 0.610 36 H 0.133 0.867 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 -24.178 -1.665 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.018 4.018 12 O -0.227 6.227 13 C 0.105 3.895 14 C -0.206 4.206 15 C -0.083 4.083 16 C -0.098 4.098 17 C -0.091 4.091 18 C -0.179 4.179 19 C 0.070 3.930 20 O -0.312 6.312 21 C -0.162 4.162 22 C 0.004 3.996 23 C -0.190 4.190 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.245 0.755 36 H 0.150 0.850 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.933 -23.918 -1.047 23.959 hybrid contribution 0.179 0.931 -0.501 1.072 sum 1.112 -22.987 -1.548 23.066 Atomic orbital electron populations 1.69952 1.06088 1.26789 1.50657 1.25022 0.94886 0.99380 0.95165 0.86545 0.79841 0.83191 0.78164 1.20593 1.21174 1.19792 1.21179 0.93163 0.90707 1.50901 0.92438 1.19047 0.93820 0.90857 0.97526 1.21729 0.99909 0.90935 1.02047 1.23256 0.92273 0.85317 1.00921 1.86162 1.37313 1.11945 1.87309 1.18802 0.91563 0.85574 0.93522 1.21265 0.94394 0.99102 1.05823 1.20880 0.99496 0.91153 0.96729 1.18067 0.92725 0.93844 1.05193 1.20886 0.99673 0.91031 0.97472 1.21017 0.92719 0.99651 1.04509 1.18118 0.88942 0.85987 0.99950 1.84821 1.68127 1.44720 1.33563 1.21172 1.00197 0.91084 1.03786 1.17554 0.92074 0.92568 0.97419 1.20110 0.99917 0.89244 1.09745 0.92890 0.96317 0.96292 0.92129 0.92144 0.92214 0.92217 0.84603 0.85032 0.85217 0.85585 0.75458 0.84955 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.23 5.52 -26.73 -0.15 -2.37 16 11 C 0.06 0.97 4.73 37.16 0.18 1.15 16 12 O -0.31 -5.31 10.11 -19.36 -0.20 -5.51 16 13 C 0.15 2.26 6.63 -39.58 -0.26 2.00 16 14 C -0.19 -2.46 8.93 -39.78 -0.36 -2.81 16 15 C -0.06 -0.73 9.76 -39.51 -0.39 -1.11 16 16 C -0.10 -1.15 5.74 -106.78 -0.61 -1.76 16 17 C -0.07 -0.69 9.76 -39.51 -0.39 -1.08 16 18 C -0.16 -1.49 9.88 -39.78 -0.39 -1.89 16 19 C 0.11 1.16 6.65 -39.58 -0.26 0.89 16 20 O -0.50 -4.35 13.47 -19.38 -0.26 -4.61 16 21 C -0.14 -1.59 9.68 -39.34 -0.38 -1.97 16 22 C 0.00 0.05 5.74 -106.85 -0.61 -0.56 16 23 C -0.17 -2.33 9.68 -39.33 -0.38 -2.71 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.97 7.63 -51.93 -0.40 0.57 16 30 H 0.06 0.97 7.63 -51.93 -0.40 0.58 16 31 H 0.14 1.67 6.21 -52.49 -0.33 1.35 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.39 1.44 9.06 45.56 0.41 1.86 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -31.87 319.42 -8.54 -40.41 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.05 Total: -0.64 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -4.55 Total: -25.12 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.46 Total: -10.12 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.87 -8.54 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.696 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds