Wall clock time and date at job start Mon Mar 30 2020 07:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99586 * 2 1 4 4 H 1.48493 * 109.46975 * 269.99608 * 3 2 1 5 5 H 1.48503 * 109.47357 * 29.99529 * 3 2 1 6 6 H 1.48496 * 109.47079 * 149.99720 * 3 2 1 7 7 C 1.37871 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47131 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.47038 * 180.02562 * 11 10 9 13 13 C 1.35879 * 116.99848 * 180.02562 * 12 11 10 14 14 C 1.39849 * 119.57390 * 359.97438 * 13 12 11 15 15 C 1.35994 * 120.93645 * 180.02562 * 14 13 12 16 16 C 1.40574 * 119.75439 * 359.97438 * 15 14 13 17 17 C 1.40573 * 121.15988 * 179.97438 * 16 15 14 18 18 C 1.35995 * 119.75181 * 180.02562 * 17 16 15 19 19 C 1.39851 * 120.93373 * 0.02562 * 18 17 16 20 20 O 1.35885 * 119.56853 * 179.97438 * 19 18 17 21 21 C 1.36572 * 120.85923 * 0.25530 * 19 18 17 22 22 C 1.40484 * 119.62313 * 359.46161 * 21 19 18 23 23 C 1.36572 * 119.57062 * 180.02562 * 13 12 11 24 24 H 0.96993 * 120.00464 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46542 * 60.00079 * 9 7 2 26 26 H 1.08991 * 109.47342 * 300.00133 * 9 7 2 27 27 H 1.09000 * 109.46358 * 60.00618 * 10 9 7 28 28 H 1.08999 * 109.47084 * 300.00284 * 10 9 7 29 29 H 1.09003 * 109.46752 * 60.00541 * 11 10 9 30 30 H 1.08994 * 109.47211 * 300.00817 * 11 10 9 31 31 H 1.07999 * 119.52986 * 359.97438 * 14 13 12 32 32 H 1.08002 * 120.12201 * 180.02562 * 15 14 13 33 33 H 1.08001 * 120.12800 * 0.04809 * 17 16 15 34 34 H 1.08000 * 119.53649 * 180.02562 * 18 17 16 35 35 H 0.96705 * 113.99564 * 90.00522 * 20 19 18 36 36 H 1.07997 * 120.18866 * 179.72174 * 21 19 18 37 37 H 1.07995 * 120.18750 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 8 2.4093 -6.0732 0.0005 13 6 1.8900 -7.3288 -0.0005 14 6 0.5022 -7.5018 -0.0015 15 6 -0.0473 -8.7458 -0.0020 16 6 0.7872 -9.8770 -0.0021 17 6 0.2509 -11.1765 -0.0020 18 6 1.0849 -12.2507 -0.0015 19 6 2.4733 -12.0830 -0.0005 20 8 3.2807 -13.1759 0.0004 21 6 3.0281 -10.8351 0.0052 22 6 2.1944 -9.7044 -0.0013 23 6 2.7300 -8.4056 0.0005 24 1 -0.4850 0.8399 -0.0004 25 1 0.6249 -2.5570 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 2.8721 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.8543 -5.0446 -0.8904 30 1 0.8536 -5.0451 0.8895 31 1 -0.1422 -6.6351 -0.0011 32 1 -1.1208 -8.8641 -0.0032 33 1 -0.8193 -11.3212 -0.0027 34 1 0.6691 -13.2475 -0.0019 35 1 3.5152 -13.4925 -0.8828 36 1 4.1017 -10.7181 0.0104 37 1 3.8001 -8.2595 0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:49 Heat of formation + Delta-G solvation = -76.263306 kcal Electronic energy + Delta-G solvation = -19032.777089 eV Core-core repulsion = 15931.900591 eV Total energy + Delta-G solvation = -3100.876499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69310 -40.26814 -38.54358 -36.20774 -35.43817 -33.84016 -33.42402 -30.28139 -29.96226 -28.55340 -25.40484 -24.44884 -23.43318 -23.05473 -21.98125 -19.85201 -18.89758 -18.47164 -18.22862 -17.22206 -17.18905 -16.54801 -16.34004 -15.73822 -15.60159 -15.12635 -14.79992 -14.45945 -14.36833 -14.18487 -14.03614 -13.83881 -13.34606 -12.98781 -12.73120 -12.55138 -12.54771 -12.39244 -11.80700 -11.71020 -11.56319 -11.46939 -11.32396 -11.24833 -10.83363 -10.57579 -9.25298 -8.70825 -8.22988 -6.33719 -0.48380 -0.02906 1.02924 1.40572 1.41494 1.52811 1.89111 2.18745 2.42200 3.02813 3.10919 3.30263 3.61818 3.89095 3.91783 4.01297 4.03506 4.12158 4.24589 4.34150 4.38531 4.43808 4.62969 4.81178 4.85089 4.90765 4.98362 5.07064 5.08423 5.19394 5.33035 5.44738 5.47068 5.49853 5.65010 5.72376 5.79747 5.84432 6.19109 6.41880 6.81569 6.85145 7.35539 8.88992 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.056332 B = 0.002619 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.932308 B =10690.280961 C =11158.905758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.097 4.097 11 C 0.070 3.930 12 O -0.331 6.331 13 C 0.124 3.876 14 C -0.208 4.208 15 C -0.053 4.053 16 C -0.113 4.113 17 C -0.069 4.069 18 C -0.160 4.160 19 C 0.122 3.878 20 O -0.510 6.510 21 C -0.163 4.163 22 C -0.010 4.010 23 C -0.180 4.180 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.138 0.862 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.412 0.588 36 H 0.138 0.862 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -25.976 -1.783 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.135 4.135 11 C -0.005 4.005 12 O -0.245 6.245 13 C 0.079 3.921 14 C -0.226 4.226 15 C -0.070 4.070 16 C -0.113 4.113 17 C -0.086 4.086 18 C -0.179 4.179 19 C 0.078 3.922 20 O -0.324 6.324 21 C -0.182 4.182 22 C -0.011 4.011 23 C -0.199 4.199 24 H 0.074 0.926 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.182 0.818 33 H 0.179 0.821 34 H 0.169 0.831 35 H 0.272 0.728 36 H 0.156 0.844 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.695 -25.748 -1.182 25.784 hybrid contribution 0.271 1.238 -0.474 1.353 sum 0.965 -24.510 -1.657 24.584 Atomic orbital electron populations 1.70070 1.07674 1.27933 1.51418 1.25948 0.95816 1.03295 0.94602 0.85437 0.78632 0.78392 0.78545 1.19705 1.20593 1.18915 1.21627 0.93596 0.92196 1.50934 0.92240 1.18908 0.94132 0.92087 0.95687 1.21441 0.98863 0.91374 1.01813 1.22914 0.91687 0.84262 1.01639 1.86073 1.37443 1.12746 1.88282 1.19035 0.92790 0.84654 0.95631 1.21338 0.93611 1.00207 1.07429 1.21238 1.01089 0.90181 0.94527 1.18383 0.92438 0.95170 1.05280 1.21227 1.01404 0.89828 0.96164 1.21348 0.92261 1.00917 1.03341 1.18268 0.89665 0.85947 0.98340 1.84759 1.67964 1.44004 1.35662 1.21279 1.00553 0.91288 1.05075 1.17737 0.93085 0.92363 0.97887 1.20251 1.00004 0.89736 1.09909 0.92616 0.98074 0.98099 0.92363 0.92288 0.91493 0.91588 0.84393 0.81810 0.82052 0.83051 0.72778 0.84448 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.29 21.44 0.28 -55.61 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.08 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.51 4.97 29.85 0.15 1.65 16 10 C -0.10 -4.09 5.52 30.60 0.17 -3.92 16 11 C 0.07 2.45 4.73 71.98 0.34 2.79 16 12 O -0.33 -11.54 10.11 -92.19 -0.93 -12.48 16 13 C 0.12 3.79 6.63 22.27 0.15 3.93 16 14 C -0.21 -5.40 8.93 22.14 0.20 -5.20 16 15 C -0.05 -1.10 9.76 22.32 0.22 -0.88 16 16 C -0.11 -2.43 5.74 -21.27 -0.12 -2.55 16 17 C -0.07 -1.08 9.76 22.32 0.22 -0.86 16 18 C -0.16 -2.45 9.88 22.14 0.22 -2.23 16 19 C 0.12 2.20 6.65 22.27 0.15 2.35 16 20 O -0.51 -7.52 13.47 -92.25 -1.24 -8.76 16 21 C -0.16 -3.45 9.68 22.43 0.22 -3.23 16 22 C -0.01 -0.26 5.74 -21.31 -0.12 -0.38 16 23 C -0.18 -5.03 9.68 22.43 0.22 -4.81 16 24 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 25 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 2.22 7.63 -2.39 -0.02 2.21 16 30 H 0.07 2.21 7.63 -2.39 -0.02 2.19 16 31 H 0.14 3.41 6.21 -2.91 -0.02 3.39 16 32 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.41 1.91 9.06 -74.05 -0.67 1.24 16 36 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -68.95 319.42 3.23 -65.71 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.41 Total: 8.61 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 2.69 Total: -43.57 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.28 Total: -55.61 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -2.17 Total: -21.24 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.95 3.23 -65.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.549 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds