Wall clock time and date at job start Mon Mar 30 2020 07:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30934 * 1 3 3 Si 1.86795 * 120.00312 * 2 1 4 4 H 1.48491 * 109.47214 * 274.98917 * 3 2 1 5 5 H 1.48506 * 109.47228 * 34.98781 * 3 2 1 6 6 H 1.48499 * 109.47458 * 154.98493 * 3 2 1 7 7 C 1.39820 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99864 * 148.78565 * 7 2 1 9 9 C 1.41082 * 120.00503 * 328.77904 * 7 2 1 10 10 C 1.40913 * 120.15410 * 157.45934 * 9 7 2 11 11 C 1.36282 * 119.84763 * 180.02562 * 10 9 7 12 12 C 1.39644 * 120.15296 * 0.02562 * 11 10 9 13 13 N 1.38701 * 119.84658 * 179.97438 * 12 11 10 14 14 C 1.39908 * 119.99800 * 188.13526 * 13 12 11 15 15 C 1.38748 * 120.08337 * 258.73699 * 14 13 12 16 16 C 1.38207 * 120.01800 * 180.23698 * 15 14 13 17 17 C 1.38515 * 120.18126 * 359.48350 * 16 15 14 18 18 F 1.35099 * 119.91892 * 180.25899 * 17 16 15 19 19 C 1.38427 * 120.16183 * 0.51609 * 17 16 15 20 20 C 1.38680 * 119.98442 * 359.73955 * 19 17 16 21 21 N 1.39874 * 120.09337 * 180.02562 * 20 19 17 22 22 C 1.39638 * 120.30641 * 0.24982 * 12 11 10 23 23 C 1.36293 * 120.15077 * 359.48758 * 22 12 11 24 24 H 0.97000 * 119.99564 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.07582 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.92440 * 179.97438 * 11 10 9 27 27 H 0.96996 * 119.99893 * 8.13610 * 13 12 11 28 28 H 1.08004 * 119.99129 * 359.95256 * 15 14 13 29 29 H 1.08006 * 119.90899 * 179.72282 * 16 15 14 30 30 H 1.08003 * 120.00678 * 179.76524 * 19 17 16 31 31 H 0.96999 * 120.00048 * 179.97438 * 21 20 19 32 32 H 0.97003 * 119.99940 * 359.97438 * 21 20 19 33 33 H 1.08000 * 119.92915 * 179.74808 * 22 12 11 34 34 H 1.08001 * 120.07952 * 180.24986 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6176 0.0000 4 1 2.3855 2.1072 -1.3947 5 1 1.4976 2.6199 0.8028 6 1 3.5897 1.4120 0.5920 7 6 2.0084 -1.2109 0.0005 8 1 2.9711 -1.2789 -0.4842 9 6 1.4562 -2.3440 0.6343 10 6 1.8735 -3.6373 0.2615 11 6 1.3356 -4.7275 0.8775 12 6 0.3726 -4.5652 1.8757 13 7 -0.1710 -5.6792 2.4980 14 6 -1.2529 -5.5333 3.3731 15 6 -1.0455 -5.5539 4.7448 16 6 -2.1159 -5.4146 5.6080 17 6 -3.3962 -5.2434 5.1078 18 9 -4.4379 -5.1025 5.9565 19 6 -3.6116 -5.2217 3.7406 20 6 -2.5433 -5.3662 2.8683 21 7 -2.7583 -5.3440 1.4863 22 6 -0.0498 -3.2868 2.2461 23 6 0.4837 -2.1877 1.6421 24 1 -0.4849 0.8401 0.0004 25 1 2.6179 -3.7642 -0.5107 26 1 1.6542 -5.7192 0.5924 27 1 0.1989 -6.5593 2.3266 28 1 -0.0481 -5.6835 5.1382 29 1 -1.9530 -5.4354 6.6755 30 1 -4.6114 -5.0919 3.3534 31 1 -2.0100 -5.4448 0.8774 32 1 -3.6557 -5.2279 1.1369 33 1 -0.7979 -3.1685 3.0160 34 1 0.1591 -1.1994 1.9323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:22 Heat of formation + Delta-G solvation = 3.751480 kcal Electronic energy + Delta-G solvation = -19716.156846 eV Core-core repulsion = 16527.582494 eV Total energy + Delta-G solvation = -3188.574351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.71179 -39.54208 -37.55559 -34.81138 -34.11725 -33.00436 -29.85222 -29.50274 -28.86258 -27.36058 -24.44882 -22.60872 -21.85925 -21.12985 -20.09140 -17.63938 -17.30182 -17.10122 -16.51045 -16.25698 -15.36946 -15.04444 -15.00413 -14.96567 -13.94072 -13.65035 -13.15901 -13.06769 -12.88021 -12.42332 -12.31303 -11.97162 -11.86223 -11.71880 -11.12910 -11.08085 -10.89444 -10.52756 -10.34786 -9.86163 -9.44432 -9.31007 -8.72724 -8.44148 -7.56643 -7.34397 -6.89966 -6.54379 -4.08460 1.38791 1.67277 2.84028 3.03886 3.10844 3.14448 3.29729 3.84749 3.97801 3.98396 4.24258 4.59886 4.62524 5.00420 5.25750 5.57161 5.73789 5.76918 5.99036 6.16847 6.20030 6.28712 6.40143 6.63364 6.84884 6.90434 7.01688 7.11855 7.24337 7.48527 7.59562 7.64632 7.75676 7.98770 8.08397 8.23058 8.46458 8.63111 8.69487 8.95461 9.07050 10.17634 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.004619 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.979164 B = 6060.548407 C = 6574.190553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.088 3.912 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.076 0.924 9 C 0.089 3.911 10 C -0.200 4.200 11 C -0.142 4.142 12 C 0.064 3.936 13 N -0.709 5.709 14 C 0.089 3.911 15 C -0.056 4.056 16 C -0.211 4.211 17 C 0.133 3.867 18 F -0.146 7.146 19 C -0.238 4.238 20 C 0.244 3.756 21 N -0.859 5.859 22 C -0.135 4.135 23 C -0.144 4.144 24 H 0.279 0.721 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.391 0.609 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.409 0.591 32 H 0.395 0.605 33 H 0.087 0.913 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 -8.582 5.529 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.504 4.504 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.220 4.220 11 C -0.163 4.163 12 C -0.030 4.030 13 N -0.342 5.342 14 C -0.010 4.010 15 C -0.077 4.077 16 C -0.233 4.233 17 C 0.113 3.887 18 F -0.125 7.125 19 C -0.263 4.263 20 C 0.134 3.866 21 N -0.395 5.395 22 C -0.157 4.157 23 C -0.164 4.164 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.226 0.774 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.239 0.761 32 H 0.223 0.777 33 H 0.105 0.895 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.371 -8.309 5.586 11.362 hybrid contribution 0.120 0.665 -0.315 0.746 sum -5.251 -7.644 5.272 10.667 Atomic orbital electron populations 1.69969 1.07870 1.29346 1.33542 1.25817 0.94305 1.01129 0.91922 0.86594 0.81476 0.81446 0.78992 1.19708 1.20085 1.18320 1.19320 1.04730 0.93733 1.32646 0.90547 1.17466 0.91253 0.91773 0.90867 1.20464 1.05779 0.92341 1.03404 1.19827 1.00548 0.97175 0.98794 1.17251 1.00668 0.85970 0.99113 1.41041 1.34963 1.07118 1.51094 1.16954 0.85949 1.08784 0.89292 1.21152 0.98458 0.95973 0.92076 1.20692 0.90974 1.11180 1.00415 1.17317 0.83861 1.00747 0.86758 1.91454 1.57201 1.93261 1.70544 1.20276 0.99066 1.15609 0.91359 1.17945 0.92414 0.91501 0.84775 1.42478 1.12139 1.81649 1.03278 1.20040 1.02247 0.91526 1.01859 1.20679 1.00971 0.96677 0.98064 0.91004 0.89015 0.89493 0.77377 0.85185 0.85454 0.85352 0.76087 0.77749 0.89518 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.31 11.72 55.54 0.65 -19.66 16 2 C 0.09 2.21 4.80 -17.34 -0.08 2.12 16 3 Si 0.89 18.66 29.66 -169.99 -5.04 13.62 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.48 -12.60 8.94 -37.91 -0.34 -12.94 16 8 H 0.08 1.97 8.01 -52.48 -0.42 1.55 16 9 C 0.09 2.34 5.57 -106.79 -0.59 1.75 16 10 C -0.20 -4.75 9.74 -39.27 -0.38 -5.13 16 11 C -0.14 -2.98 9.83 -39.76 -0.39 -3.37 16 12 C 0.06 1.31 6.11 -83.71 -0.51 0.80 16 13 N -0.71 -11.62 4.67 -8.15 -0.04 -11.66 16 14 C 0.09 1.40 4.37 -83.49 -0.37 1.03 16 15 C -0.06 -0.80 9.96 -39.40 -0.39 -1.20 16 16 C -0.21 -2.88 10.02 -39.49 -0.40 -3.28 16 17 C 0.13 1.91 7.30 -39.41 -0.29 1.63 16 18 F -0.15 -2.09 17.26 2.25 0.04 -2.05 16 19 C -0.24 -3.39 9.87 -39.35 -0.39 -3.78 16 20 C 0.24 3.68 6.64 -83.53 -0.55 3.12 16 21 N -0.86 -11.85 9.08 32.53 0.30 -11.56 16 22 C -0.14 -3.10 9.20 -39.76 -0.37 -3.46 16 23 C -0.14 -3.70 8.72 -39.27 -0.34 -4.04 16 24 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 25 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 26 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.39 5.61 8.83 -40.82 -0.36 5.25 16 28 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.41 6.12 7.67 -40.82 -0.31 5.80 16 32 H 0.39 4.47 8.84 -40.82 -0.36 4.11 16 33 H 0.09 1.95 6.92 -52.49 -0.36 1.59 16 34 H 0.10 2.80 6.51 -52.49 -0.34 2.46 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -27.28 300.13 -8.37 -35.65 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -3.41 Total: 17.87 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -5.39 Total: -26.74 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.91 Total: -42.88 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.04 Total: 13.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.28 -8.37 -35.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.405 kcal (2) G-P(sol) polarization free energy of solvation -27.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds