Wall clock time and date at job start Mon Mar 30 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47247 * 2 1 4 4 O 1.21250 * 119.99783 * 0.02562 * 3 2 1 5 5 C 1.47215 * 119.99848 * 179.97438 * 3 2 1 6 6 C 1.39328 * 120.05711 * 0.02562 * 5 3 2 7 7 C 1.40425 * 119.56752 * 180.02562 * 6 5 3 8 8 C 1.41442 * 120.16572 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00086 * 24.52964 * 8 7 6 10 10 C 1.39934 * 120.00102 * 204.52840 * 8 7 6 11 11 N 1.30828 * 119.99908 * 17.88996 * 10 8 7 12 12 Si 1.86797 * 119.99971 * 197.89153 * 10 8 7 13 13 H 1.48508 * 109.47213 * 90.00044 * 12 10 8 14 14 H 1.48506 * 109.47225 * 209.99955 * 12 10 8 15 15 H 1.48503 * 109.47432 * 329.99938 * 12 10 8 16 16 C 1.40811 * 119.66720 * 359.97438 * 7 6 5 17 17 C 1.37754 * 120.09745 * 0.02562 * 16 7 6 18 18 C 1.38297 * 120.44703 * 359.71062 * 17 16 7 19 19 C 1.50697 * 119.83661 * 180.28149 * 18 17 16 20 20 F 1.39903 * 109.47149 * 0.28101 * 19 18 17 21 21 F 1.39895 * 109.47272 * 120.28480 * 19 18 17 22 22 F 1.39902 * 109.47202 * 240.28092 * 19 18 17 23 23 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47261 * 299.99818 * 1 2 3 25 25 H 1.08999 * 109.47535 * 59.99622 * 1 2 3 26 26 H 1.09001 * 109.46808 * 239.99906 * 2 1 3 27 27 H 1.08999 * 109.47110 * 120.00705 * 2 1 3 28 28 H 1.08006 * 120.21406 * 359.97210 * 6 5 3 29 29 H 0.96996 * 119.99937 * 180.02562 * 11 10 8 30 30 H 1.08005 * 119.94718 * 180.02562 * 16 7 6 31 31 H 1.08002 * 119.77390 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3424 0.0005 5 6 3.4797 1.6898 0.0006 6 6 4.3861 0.6316 0.0006 7 6 5.7645 0.8999 0.0017 8 6 6.6958 -0.1646 0.0011 9 1 6.4112 -1.1309 -0.3883 10 6 7.9860 0.0342 0.5052 11 7 8.2343 1.0572 1.2820 12 14 9.3536 -1.1610 0.0689 13 1 10.0350 -0.7032 -1.1687 14 1 10.3349 -1.2182 1.1820 15 1 8.7783 -2.5118 -0.1537 16 6 6.2148 2.2341 0.0022 17 6 5.3065 3.2698 0.0022 18 6 3.9481 3.0105 -0.0044 19 6 2.9666 4.1541 -0.0107 20 9 3.6638 5.3670 -0.0151 21 9 2.1639 4.0733 -1.1536 22 9 2.1609 4.0834 1.1308 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.0309 -0.3883 0.0006 29 1 9.1287 1.1952 1.6311 30 1 7.2739 2.4456 0.0026 31 1 5.6577 4.2911 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514263264.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:23 Heat of formation + Delta-G solvation = -185.723370 kcal Electronic energy + Delta-G solvation = -21158.689115 eV Core-core repulsion = 17375.376237 eV Total energy + Delta-G solvation = -3783.312878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.10912 -46.70449 -46.48682 -39.23472 -37.31951 -34.10536 -32.64960 -30.74532 -30.13542 -26.90012 -24.86101 -23.61499 -22.13708 -20.55797 -19.23772 -17.77864 -17.42475 -17.22726 -17.02777 -15.56885 -15.31705 -15.04815 -14.58151 -13.69947 -13.56564 -13.55057 -13.42459 -13.16947 -13.06430 -12.77077 -12.72676 -12.54924 -12.38049 -11.91907 -11.75625 -11.49808 -11.37408 -11.31615 -10.95412 -10.87004 -10.64635 -10.41483 -9.89056 -9.52107 -8.99898 -8.00336 -7.88469 -7.14814 -4.78654 1.57365 2.37726 2.87464 2.91641 2.92475 3.33383 3.66435 3.80037 4.21363 4.56229 4.96885 5.15562 5.17548 5.32753 5.39523 5.58438 5.62133 5.92154 6.02999 6.10163 6.17623 6.38314 6.47588 6.60459 6.66789 6.85742 7.06362 7.16593 7.46048 7.59700 7.75124 8.14545 8.18480 8.44237 8.47215 9.78946 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.006413 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.864875 B = 4365.029594 C = 5415.268509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.165 4.165 3 C 0.386 3.614 4 O -0.455 6.455 5 C -0.098 4.098 6 C -0.172 4.172 7 C 0.111 3.889 8 C -0.444 4.444 9 H 0.088 0.912 10 C 0.073 3.927 11 N -0.775 5.775 12 Si 0.916 3.084 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.259 1.259 16 C -0.148 4.148 17 C -0.067 4.067 18 C -0.267 4.267 19 C 0.521 3.479 20 F -0.199 7.199 21 F -0.185 7.185 22 F -0.185 7.185 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.288 0.712 30 H 0.129 0.871 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -2.048 -1.602 4.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.265 3.735 4 O -0.331 6.331 5 C -0.100 4.100 6 C -0.191 4.191 7 C 0.108 3.892 8 C -0.471 4.471 9 H 0.106 0.894 10 C -0.148 4.148 11 N -0.398 5.398 12 Si 0.739 3.261 13 H -0.189 1.189 14 H -0.200 1.200 15 H -0.183 1.183 16 C -0.167 4.167 17 C -0.086 4.086 18 C -0.269 4.269 19 C 0.467 3.533 20 F -0.180 7.180 21 F -0.167 7.167 22 F -0.166 7.166 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.132 0.868 29 H 0.100 0.900 30 H 0.147 0.853 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.992 -1.432 -1.442 4.479 hybrid contribution 0.702 -0.310 -0.021 0.767 sum -3.290 -1.741 -1.463 4.000 Atomic orbital electron populations 1.21572 0.94317 1.01077 1.02813 1.21909 0.97429 0.96388 1.04564 1.22728 0.88764 0.90949 0.71101 1.90520 1.58841 1.47366 1.36327 1.19646 0.93327 0.93022 1.03974 1.21318 0.92816 0.96226 1.08755 1.17704 0.91157 0.93176 0.87135 1.19774 0.95211 0.98175 1.33991 0.89420 1.26049 1.00185 0.96183 0.92342 1.69786 1.23431 1.26309 1.20303 0.86166 0.79634 0.80938 0.79327 1.18881 1.19973 1.18253 1.21468 0.99261 0.91666 1.04337 1.20474 0.91080 0.98975 0.98037 1.19282 0.93156 0.90777 1.23733 1.18199 0.79882 0.81585 0.73591 1.93052 1.79416 1.49143 1.96425 1.93118 1.75723 1.96294 1.51518 1.93126 1.75550 1.96350 1.51587 0.92566 0.92364 0.92374 0.88578 0.88510 0.86841 0.90030 0.85328 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.20 37.16 0.34 -1.53 16 2 C -0.17 -2.44 5.02 -27.88 -0.14 -2.58 16 3 C 0.39 7.52 6.93 -30.66 -0.21 7.31 16 4 O -0.45 -9.78 10.88 5.58 0.06 -9.72 16 5 C -0.10 -2.13 5.83 -105.13 -0.61 -2.74 16 6 C -0.17 -3.67 9.21 -38.35 -0.35 -4.02 16 7 C 0.11 2.62 5.57 -106.88 -0.60 2.02 16 8 C -0.44 -10.19 9.05 -37.73 -0.34 -10.53 16 9 H 0.09 1.89 7.91 -52.49 -0.41 1.47 16 10 C 0.07 1.61 5.13 -17.34 -0.09 1.52 16 11 N -0.78 -17.78 10.96 55.55 0.61 -17.17 16 12 Si 0.92 16.39 29.59 -169.99 -5.03 11.36 16 13 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 14 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 15 H -0.26 -4.57 7.11 56.52 0.40 -4.16 16 16 C -0.15 -3.48 8.69 -38.79 -0.34 -3.82 16 17 C -0.07 -1.51 9.39 -39.74 -0.37 -1.88 16 18 C -0.27 -6.05 5.43 -103.89 -0.56 -6.62 16 19 C 0.52 11.51 2.78 36.00 0.10 11.61 16 20 F -0.20 -4.14 15.95 2.25 0.04 -4.10 16 21 F -0.19 -4.12 15.01 2.25 0.03 -4.09 16 22 F -0.18 -4.17 14.99 2.25 0.03 -4.14 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 25 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 26 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 27 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 28 H 0.11 2.11 7.04 -52.48 -0.37 1.74 16 29 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 30 H 0.13 3.07 6.15 -52.48 -0.32 2.74 16 31 H 0.11 2.24 7.13 -52.49 -0.37 1.87 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -25.74 277.96 -5.96 -31.71 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.72 Total: 3.23 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.18 Total: -11.26 kcal Atomic # 7 Polarization: -17.78 SS G_CDS: 0.61 Total: -17.17 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.06 Total: -9.72 kcal Atomic # 9 Polarization: -12.44 SS G_CDS: 0.10 Total: -12.33 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.36 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.74 -5.96 -31.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514263264.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.017 kcal (2) G-P(sol) polarization free energy of solvation -25.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds